| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g21426 | 9:13,461,105-13,465,951 | - | - | - | - | - | - | Detail |
| C1H9g04789 | 9:13,473,666-13,476,252 | + | C2H9g06261 | CX9g055711 | LOC_Os09g26960 | Os09g0441400 | - | Detail |
| C1H9g04387 | 9:13,481,147-13,483,789 | + | C2H9g20934 | CX9g057450 | LOC_Os09g26970 | Os09g0441600 | qGL9.1 | Detail |
| C1H9g03625 | 9:13,486,235-13,489,918 | - | C2H9g16046 | CX9g057450 | LOC_Os09g26980 | Os09g0441700 | - | Detail |
| C1H9g22464 | 9:13,500,039-13,504,329 | + | C2H9g26101 | CX9g057036 | LOC_Os09g26999 | Os09g0441900 | - | Detail |
| C1H9g04138 | 9:13,509,833-13,511,300 | - | - | - | - | - | - | Detail |
| C1H9g13747 | 9:13,525,098-13,526,252 | - | - | CX9g056443 | - | Os09g0442000 | - | Detail |
| C1H9g22007 | 9:13,528,757-13,531,306 | - | C2H9g18709 | CX9g056107 | LOC_Os09g27010 | Os09g0442100 | - | Detail |
| C1H9g14149 | 9:13,544,708-13,549,015 | + | C2H9g10492 | CX9g055060 | LOC_Os09g27030 | Os09g0442300 | - | Detail |
| C1H9g06228 | 9:13,550,934-13,553,353 | + | C2H9g27420 | CX9g054851 | LOC_Os09g27040 | Os09g0442400 | OsGEX1 | Detail |
| C1H9g28611 | 9:13,559,267-13,562,768 | + | C2H9g03487 | CX9g058113 | LOC_Os09g27050 | Os09g0442600 | OsRSH3 | Detail |
| C1H9g25409 | 9:13,566,086-13,566,693 | - | C2H9g20875 | CX9g057038 | LOC_Os09g27060 | Os09g0442700 | OsDDM1a | Detail |
| C1H9g17795 | 9:13,577,332-13,581,797 | - | C2H9g29144 | CX9g057038 | LOC_Os09g27060 | Os09g0442700 | OsDDM1a | Detail |
| C1H9g01438 | 9:13,585,058-13,587,944 | + | C2H9g18109 | CX9g057769 | LOC_Os09g27070 | Os09g0442800 | - | Detail |
| C1H9g25976 | 9:13,591,005-13,595,509 | + | C2H9g05302 | CX9g056575 | LOC_Os09g27080 | Os09g0442900 | - | Detail |
| C1H9g18855 | 9:13,595,225-13,604,627 | - | C2H9g09021 | CX9g055406 | LOC_Os09g27090 | Os09g0443000 | - | Detail |
| C1H9g19048 | 9:13,605,002-13,605,610 | + | C2H9g09021 | CX9g055406 | LOC_Os09g27100 | Os09g0443000 | - | Detail |
| C1H9g26138 | 9:13,608,828-13,618,054 | - | C2H9g03456 | CX9g055710 | LOC_Os09g27110 | Os09g0559500 | - | Detail |
| C1H9g16243 | 9:13,622,599-13,625,638 | - | C2H9g16776 | CX9g054949 | LOC_Os09g27140 | Os09g0443500 | - | Detail |
| C1H9g02557 | 9:13,628,730-13,630,553 | - | C2H9g27037 | CX9g055154 | LOC_Os09g27150 | Os09g0544300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g01980 | 3:28,769,869-28,772,490 | - | C1H3g09903 | CX3g026536 | LOC_Os03g55320 | Os03g0761100 | - | Detail |
| C2H3g06672 | 3:28,774,318-28,777,794 | - | C1H3g13690 | CX3g026537 | LOC_Os03g55330 | Os03g0761200 | - | Detail |
| C2H3g12099 | 3:28,793,894-28,798,830 | + | C1H3g30024 | CX3g028991 | LOC_Os03g55360 | Os03g0761700 | - | Detail |
| C2H3g13639 | 3:28,801,419-28,805,273 | + | C1H3g06743 | CX3g030441 | LOC_Os03g55380 | Os03g0761900 | - | Detail |
| C2H3g22708 | 3:28,807,938-28,813,613 | - | C1H3g04781 | CX3g027555 | LOC_Os03g55389 | Os03g0762000 | HD6, Hd6, Hd6(t)*, OsCKA2, OSCKA2 | Detail |
| C2H3g06124 | 3:28,815,348-28,816,132 | - | C1H3g13239 | CX3g029923 | LOC_Os03g55400 | Os03g0762100 | - | Detail |
| C2H3g03334 | 3:28,824,236-28,825,529 | + | C1H3g15054 | CX3g027273 | LOC_Os03g55410 | Os03g0762300 | - | Detail |
| C2H3g28441 | 3:28,829,093-28,831,783 | + | C1H3g30848 | CX3g028085 | LOC_Os03g55420 | Os03g0762400 | - | Detail |
| C2H3g23566 | 3:28,836,777-28,837,357 | + | C1H3g21651 | CX3g025152 | LOC_Os07g02460 | Os03g0206400 | - | Detail |
| C2H3g15621 | 3:28,837,367-28,837,765 | + | - | - | LOC_Os03g55430 | Os03g0762500 | - | Detail |
| C2H3g21236 | 3:28,841,343-28,843,221 | - | C1H3g30412 | CX3g028267 | LOC_Os03g55450 | Os03g0762700 | - | Detail |
| C2H3g28904 | 3:28,851,569-28,855,786 | + | C1H3g31602 | CX3g027974 | LOC_Os03g55470 | Os03g0762900 | - | Detail |
| C2H3g20218 | 3:28,861,702-28,866,046 | + | C1H3g12054 | CX3g028419 | LOC_Os03g55490 | Os03g0763000 | - | Detail |
| C2H3g15832 | 3:28,890,305-28,892,884 | + | C1H3g10528 | CX3g027285 | LOC_Os03g55530 | Os03g0764000 | GSE3 | Detail |
| C2H3g26472 | 3:28,905,764-28,912,939 | - | C1H3g07992 | CX3g027062 | LOC_Os03g55560 | Os03g0764300 | OstMAPKKK5 | Detail |
| C2H3g25717 | 3:28,919,148-28,926,059 | + | C1H3g08783 | CX3g027539 | LOC_Os03g55570 | Os03g0764550 | - | Detail |
| C2H3g13812 | 3:28,935,297-28,937,445 | + | C1H3g17565 | CX3g029766 | LOC_Os03g55590 | Os03g0764600 | OsHHO3 | Detail |
| C2H3g16680 | 3:28,942,582-28,947,621 | + | C1H3g10682 | CX3g030582 | LOC_Os03g55600 | Os03g0764800 | SAPK8, OsSAPK8 | Detail |
| C2H3g01981 | 3:28,965,418-28,968,051 | + | C1H3g29826 | CX3g027424 | LOC_Os03g55620 | Os03g0765000 | - | Detail |
| C2H3g10671 | 3:28,969,609-28,972,477 | + | C1H3g07713 | CX3g029687 | LOC_Os03g55630 | Os03g0765100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |