| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g21426 | 9:13,461,105-13,465,951 | - | - | - | - | - | - | Detail |
| C1H9g04789 | 9:13,473,666-13,476,252 | + | C2H9g06261 | CX9g055711 | LOC_Os09g26960 | Os09g0441400 | - | Detail |
| C1H9g04387 | 9:13,481,147-13,483,789 | + | C2H9g20934 | CX9g057450 | LOC_Os09g26970 | Os09g0441600 | qGL9.1 | Detail |
| C1H9g03625 | 9:13,486,235-13,489,918 | - | C2H9g16046 | CX9g057450 | LOC_Os09g26980 | Os09g0441700 | - | Detail |
| C1H9g22464 | 9:13,500,039-13,504,329 | + | C2H9g26101 | CX9g057036 | LOC_Os09g26999 | Os09g0441900 | - | Detail |
| C1H9g04138 | 9:13,509,833-13,511,300 | - | - | - | - | - | - | Detail |
| C1H9g13747 | 9:13,525,098-13,526,252 | - | - | CX9g056443 | - | Os09g0442000 | - | Detail |
| C1H9g22007 | 9:13,528,757-13,531,306 | - | C2H9g18709 | CX9g056107 | LOC_Os09g27010 | Os09g0442100 | - | Detail |
| C1H9g14149 | 9:13,544,708-13,549,015 | + | C2H9g10492 | CX9g055060 | LOC_Os09g27030 | Os09g0442300 | - | Detail |
| C1H9g06228 | 9:13,550,934-13,553,353 | + | C2H9g27420 | CX9g054851 | LOC_Os09g27040 | Os09g0442400 | OsGEX1 | Detail |
| C1H9g28611 | 9:13,559,267-13,562,768 | + | C2H9g03487 | CX9g058113 | LOC_Os09g27050 | Os09g0442600 | OsRSH3 | Detail |
| C1H9g25409 | 9:13,566,086-13,566,693 | - | C2H9g20875 | CX9g057038 | LOC_Os09g27060 | Os09g0442700 | OsDDM1a | Detail |
| C1H9g17795 | 9:13,577,332-13,581,797 | - | C2H9g29144 | CX9g057038 | LOC_Os09g27060 | Os09g0442700 | OsDDM1a | Detail |
| C1H9g01438 | 9:13,585,058-13,587,944 | + | C2H9g18109 | CX9g057769 | LOC_Os09g27070 | Os09g0442800 | - | Detail |
| C1H9g25976 | 9:13,591,005-13,595,509 | + | C2H9g05302 | CX9g056575 | LOC_Os09g27080 | Os09g0442900 | - | Detail |
| C1H9g18855 | 9:13,595,225-13,604,627 | - | C2H9g09021 | CX9g055406 | LOC_Os09g27090 | Os09g0443000 | - | Detail |
| C1H9g19048 | 9:13,605,002-13,605,610 | + | C2H9g09021 | CX9g055406 | LOC_Os09g27100 | Os09g0443000 | - | Detail |
| C1H9g26138 | 9:13,608,828-13,618,054 | - | C2H9g03456 | CX9g055710 | LOC_Os09g27110 | Os09g0559500 | - | Detail |
| C1H9g16243 | 9:13,622,599-13,625,638 | - | C2H9g16776 | CX9g054949 | LOC_Os09g27140 | Os09g0443500 | - | Detail |
| C1H9g02557 | 9:13,628,730-13,630,553 | - | C2H9g27037 | CX9g055154 | LOC_Os09g27150 | Os09g0544300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g11742 | 2:5,273,597-5,275,375 | + | C1H2g24396 | CX2g021980 | LOC_Os02g10800 | Os02g0202400 | BT1-1, OsBT1-1, OsEnS-29 | Detail |
| C2H2g19152 | 2:5,276,189-5,277,880 | - | C1H2g08933 | CX2g024114 | LOC_Os02g10810 | Os02g0202500 | - | Detail |
| C2H2g03245 | 2:5,280,679-5,283,557 | - | C1H2g01124 | CX2g021583 | LOC_Os02g10820 | Os02g0202600 | - | Detail |
| C2H2g06319 | 2:5,284,423-5,289,562 | - | C1H2g31302 | CX2g022814 | LOC_Os02g10830 | Os02g0202700 | OsSAT1;2 | Detail |
| C2H2g07043 | 2:5,291,017-5,294,153 | - | C1H2g29373 | CX2g019052 | LOC_Os02g10850 | Os02g0202900 | - | Detail |
| C2H2g24991 | 2:5,296,406-5,298,717 | - | C1H2g02349 | CX2g019052 | LOC_Os02g10860 | Os02g0203000 | OsHY5L1, OsbZIP18 | Detail |
| C2H2g13298 | 2:5,322,255-5,323,208 | - | - | - | - | Os02g0578201 | - | Detail |
| C2H2g10759 | 2:5,330,786-5,335,148 | - | C1H2g24176 | CX2g020524 | LOC_Os02g10900 | Os02g0203500 | RLS1 | Detail |
| C2H2g18458 | 2:5,338,312-5,339,617 | - | C1H2g09288 | CX2g021071 | LOC_Os02g10920 | Os02g0203700 | SRZ1 | Detail |
| C2H2g20592 | 2:5,353,511-5,361,697 | + | C1H2g01355 | CX2g021033 | LOC_Os02g10970 | Os02g0121300 | LRT2, CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2 | Detail |
| C2H2g16217 | 2:5,363,787-5,366,941 | + | C1H2g02729 | CX2g020882 | LOC_Os02g10990 | Os02g0204400 | - | Detail |
| C2H2g15057 | 2:5,370,856-5,372,360 | + | C1H2g29802 | CX2g024407 | LOC_Os02g11000 | Os02g0204500 | - | Detail |
| C2H2g26988 | 2:5,391,116-5,393,386 | - | C1H2g04626 | CX2g022229 | LOC_Os02g11020 | Os02g0204700 | - | Detail |
| C2H2g03770 | 2:5,423,064-5,425,361 | - | C1H2g15482 | CX2g019164 | LOC_Os02g11030 | Os02g0205000 | - | Detail |
| C2H2g05927 | 2:5,426,667-5,427,963 | - | C1H2g23876 | CX2g022500 | LOC_Os02g11040 | Os02g0205200 | - | Detail |
| C2H2g06065 | 2:5,433,561-5,438,148 | - | C1H2g25099 | CX2g023949 | LOC_Os02g11050 | Os02g0205300 | - | Detail |
| C2H2g04587 | 2:5,440,616-5,445,478 | + | C1H2g05033 | CX2g022352 | LOC_Os02g11060 | Os02g0205400 | - | Detail |
| C2H2g22003 | 2:5,446,223-5,447,903 | - | C1H2g08007 | CX2g023216 | LOC_Os02g11070 | Os02g0205500 | - | Detail |
| C2H2g16132 | 2:5,478,867-5,480,336 | - | C1H2g21297 | CX2g022369 | LOC_Os02g11110 | Os02g0206100 | - | Detail |
| C2H2g24159 | 2:5,485,258-5,486,748 | - | C1H2g21297 | CX2g022369 | LOC_Os02g11130 | Os02g0206400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |