| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g13057 | 9:12,584,138-12,585,307 | - | C2H9g20999 | CX9g057047 | LOC_Os09g25430 | Os09g0421700 | DRG9 | Detail |
| C1H9g23603 | 9:12,587,943-12,590,276 | - | C2H9g15585 | CX9g057707 | LOC_Os09g25440 | Os09g0421800 | - | Detail |
| C1H9g04652 | 9:12,593,636-12,598,556 | - | C2H9g18547 | CX9g057935 | LOC_Os09g25460 | Os09g0422000 | - | Detail |
| C1H9g01940 | 9:12,615,438-12,619,954 | + | C2H9g29866 | CX9g055442 | LOC_Os09g25490 | Os09g0422500 | BC6, Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9 | Detail |
| C1H9g20433 | 9:12,620,407-12,626,122 | - | C2H9g13149 | CX9g056791 | LOC_Os09g25500 | Os09g0422600 | - | Detail |
| C1H9g21248 | 9:12,635,681-12,639,402 | + | C2H9g06178 | CX9g057973 | LOC_Os09g25540 | Os09g0423200 | - | Detail |
| C1H9g20875 | 9:12,649,113-12,652,671 | + | C2H9g01199 | CX9g056726 | LOC_Os09g25550 | Os09g0423300 | - | Detail |
| C1H9g17046 | 9:12,653,522-12,654,362 | + | C2H9g29489 | - | LOC_Os09g25560 | Os09g0423400 | - | Detail |
| C1H9g17486 | 9:12,661,767-12,665,414 | + | C2H9g29489 | CX9g056113 | LOC_Os09g25560 | Os09g0423400 | - | Detail |
| C1H9g03392 | 9:12,670,046-12,672,492 | + | C2H9g01038 | CX9g057440 | LOC_Os09g25570 | Os09g0423500 | - | Detail |
| C1H9g16029 | 9:12,674,210-12,680,470 | - | C2H9g24507 | CX9g057486 | LOC_Os09g25580 | Os09g0423600 | - | Detail |
| C1H9g26575 | 9:12,683,243-12,685,087 | + | C2H9g10831 | CX9g055033 | LOC_Os09g25590 | Os09g0423700 | - | Detail |
| C1H9g05792 | 9:12,689,878-12,692,291 | + | C2H9g19598 | CX9g056085 | - | Os09g0423800 | - | Detail |
| C1H9g02235 | 9:12,693,511-12,694,089 | + | C2H9g25061 | CX9g056085 | - | Os09g0423800 | - | Detail |
| C1H9g00425 | 9:12,707,019-12,709,306 | + | C2H9g10731 | CX9g057342 | LOC_Os09g25610 | Os09g0424200 | - | Detail |
| C1H9g11995 | 9:12,710,832-12,714,328 | - | C2H9g23538 | CX9g056823 | LOC_Os09g25625 | Os09g0424300 | - | Detail |
| C1H9g23061 | 9:12,721,715-12,722,705 | + | C2H9g21679 | CX9g057732 | - | - | - | Detail |
| C1H9g16841 | 9:12,724,903-12,725,151 | + | C2H9g08773 | - | - | Os09g0424501 | - | Detail |
| C1H9g06900 | 9:12,725,160-12,730,885 | + | C2H9g17706 | CX9g055223 | LOC_Os09g25640 | Os09g0424600 | - | Detail |
| C1H9g23183 | 9:12,731,686-12,739,342 | - | C2H9g22032 | CX9g054887 | LOC_Os09g25650 | Os09g0424701 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g15616 | 4:12,064,538-12,064,856 | + | - | - | - | Os04g0302400 | - | Detail |
| C2H4g08426 | 4:12,110,256-12,110,840 | + | C1H4g03567 | - | - | - | - | Detail |
| C2H4g16095 | 4:12,112,293-12,114,836 | - | C1H4g13335 | CX4g035665 | LOC_Os04g23700 | Os04g0303100 | SDRLK-24 | Detail |
| C2H4g16783 | 4:12,120,500-12,120,944 | + | - | - | - | - | - | Detail |
| C2H4g28282 | 4:12,123,810-12,124,598 | - | C1H4g20293 | CX4g032076 | LOC_Os04g23700 | Os04g0303100 | SDRLK-24 | Detail |
| C2H4g05430 | 4:12,144,745-12,147,008 | + | C1H4g21824 | CX4g033015 | LOC_Os04g23820 | Os04g0303900 | - | Detail |
| C2H4g23748 | 4:12,147,701-12,153,829 | - | C1H4g20117 | CX4g035976 | LOC_Os04g23830 | Os04g0303950 | - | Detail |
| C2H4g14626 | 4:12,161,628-12,161,855 | - | C1H4g14531 | CX4g033018 | LOC_Os04g23849 | Os04g0304000 | - | Detail |
| C2H4g21835 | 4:12,178,457-12,191,053 | - | C1H4g03483 | CX4g032002 | LOC_Os04g23890 | Os04g0304200 | PHOT2, OsPHOT2, OsNPH1b | Detail |
| C2H4g30545 | 4:12,222,630-12,224,740 | + | C1H4g29080 | CX4g034278 | LOC_Os04g23910 | Os04g0304400 | OsMADS25 | Detail |
| C2H4g10003 | 4:12,294,295-12,294,879 | - | C1H4g25334 | CX4g035750 | - | Os04g0306750 | - | Detail |
| C2H4g08480 | 4:12,296,209-12,306,096 | - | C1H4g25334 | CX4g032718 | LOC_Os04g24170 | Os04g0306800 | - | Detail |
| C2H4g09830 | 4:12,312,022-12,318,178 | + | C1H4g27699 | CX4g033768 | LOC_Os04g24180 | Os04g0307200 | - | Detail |
| C2H4g00695 | 4:12,344,258-12,345,471 | + | C1H4g07699 | CX4g035129 | LOC_Os04g24300 | Os04g0307500 | - | Detail |
| C2H4g00584 | 4:12,351,570-12,356,001 | + | C1H4g07699 | CX4g035129 | LOC_Os04g24510 | Os04g0307500 | - | Detail |
| C2H4g03460 | 4:12,370,012-12,375,489 | - | - | - | - | - | - | Detail |
| C2H4g28826 | 4:12,398,216-12,399,801 | - | C1H4g00508 | CX4g036427 | - | Os04g0307800 | - | Detail |
| C2H4g26507 | 4:12,412,359-12,412,693 | + | C1H4g01491 | CX4g035129 | LOC_Os04g24300 | Os04g0367201 | - | Detail |
| C2H4g13677 | 4:12,443,202-12,447,931 | + | C1H4g03399 | CX4g035129 | LOC_Os04g24300 | Os04g0308100 | - | Detail |
| C2H4g14194 | 4:12,468,657-12,472,328 | + | C1H4g07699 | CX4g033406 | LOC_Os04g24290 | Os04g0307900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |