| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g28255 | 9:12,431,143-12,432,360 | + | C2H9g03616 | CX9g058068 | LOC_Os09g25100 | Os09g0418500 | - | Detail |
| C1H9g11840 | 9:12,432,740-12,433,980 | + | - | CX9g055309 | LOC_Os09g35760 | - | - | Detail |
| C1H9g03474 | 9:12,439,076-12,439,339 | - | - | - | - | - | - | Detail |
| C1H9g16620 | 9:12,449,144-12,449,992 | - | - | - | - | - | - | Detail |
| C1H9g10222 | 9:12,469,988-12,472,937 | - | C2H9g11990 | CX9g057653 | LOC_Os09g25150 | Os09g0419200 | - | Detail |
| C1H9g03561 | 9:12,484,501-12,485,356 | - | C2H9g18402 | CX9g055071 | - | - | - | Detail |
| C1H9g27951 | 9:12,485,681-12,487,468 | + | C2H9g00271 | CX9g056568 | LOC_Os09g25190 | Os09g0419500 | - | Detail |
| C1H9g23658 | 9:12,491,482-12,492,528 | + | C2H9g23762 | CX9g056568 | LOC_Os09g25200 | Os09g0419600 | - | Detail |
| C1H9g24531 | 9:12,494,352-12,495,792 | + | C2H9g25913 | CX9g055694 | LOC_Os09g25220 | Os09g0420000 | - | Detail |
| C1H9g05253 | 9:12,498,655-12,501,980 | + | C2H9g01801 | CX9g055694 | LOC_Os09g25260 | Os09g0420100 | - | Detail |
| C1H9g23693 | 9:12,502,359-12,502,715 | + | - | - | LOC_Os09g25270 | Os09g0420200 | - | Detail |
| C1H9g21007 | 9:12,509,867-12,513,617 | - | C2H9g28714 | CX9g055351 | LOC_Os09g25290 | Os09g0420300 | - | Detail |
| C1H9g28851 | 9:12,518,217-12,521,192 | - | C2H9g04494 | CX9g056780 | LOC_Os09g25310 | Os09g0420600 | - | Detail |
| C1H9g13617 | 9:12,521,110-12,522,957 | + | C2H9g25576 | CX9g056019 | LOC_Os09g25314 | Os09g0420700 | - | Detail |
| C1H9g09470 | 9:12,527,412-12,532,944 | - | C2H9g18572 | CX9g058181 | LOC_Os09g25330 | Os09g0420900 | - | Detail |
| C1H9g26024 | 9:12,549,259-12,553,126 | - | C2H9g09588 | CX9g055908 | LOC_Os09g25370 | Os09g0421100 | - | Detail |
| C1H9g02641 | 9:12,554,070-12,567,962 | - | C2H9g10962 | CX9g057078 | LOC_Os09g25380 | Os09g0421200 | - | Detail |
| C1H9g29866 | 9:12,568,817-12,573,021 | - | C2H9g17055 | CX9g056194 | LOC_Os09g25390 | Os09g0421300 | - | Detail |
| C1H9g17171 | 9:12,577,204-12,578,438 | + | C2H9g14095 | CX9g054998 | LOC_Os09g25410 | Os09g0421500 | - | Detail |
| C1H9g16363 | 9:12,578,796-12,581,496 | - | C2H9g26024 | CX9g055874 | LOC_Os09g25420 | Os09g0421600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g16716 | 4:29,196,574-29,202,704 | + | C1H4g13098 | CX4g034339 | LOC_Os04g56720 | Os04g0662800 | - | Detail |
| C2H4g14267 | 4:29,203,420-29,205,381 | - | C1H4g29894 | CX4g033445 | LOC_Os04g56730 | Os04g0662900 | - | Detail |
| C2H4g26679 | 4:29,222,202-29,228,139 | + | C1H4g08308 | CX4g032535 | LOC_Os04g56740 | Os04g0663100 | - | Detail |
| C2H4g19453 | 4:29,231,603-29,237,104 | - | C1H4g00285 | CX4g033028 | LOC_Os04g56750 | Os04g0663200 | - | Detail |
| C2H4g17808 | 4:29,238,059-29,238,391 | - | C1H5g05278 | CX4g031937 | LOC_Os04g56760 | Os04g0663300 | OsPHF5A1 | Detail |
| C2H4g23478 | 4:29,239,673-29,239,927 | + | C1H4g10605 | CX4g034501 | - | - | - | Detail |
| C2H4g29870 | 4:29,239,978-29,243,354 | + | C1H4g18316 | CX4g032009 | LOC_Os04g56770 | Os04g0663500 | - | Detail |
| C2H4g27682 | 4:29,244,197-29,245,269 | - | C1H4g08413 | CX4g035961 | LOC_Os04g56780 | Os04g0663600 | WOX1, Os WUS, WUS, OsWOX1, OsWUS, TAB1, TAB1/WUS, MOC3, MOC3/OsWUS | Detail |
| C2H4g25028 | 4:29,253,233-29,260,212 | - | C1H4g06808 | CX4g034853 | LOC_Os04g56790 | Os04g0663700 | - | Detail |
| C2H4g24912 | 4:29,262,184-29,262,843 | + | - | CX4g036037 | LOC_Os04g56820 | - | - | Detail |
| C2H4g18884 | 4:29,265,411-29,265,767 | + | - | CX4g035877 | - | - | - | Detail |
| C2H4g26604 | 4:29,266,394-29,267,548 | - | - | - | - | - | - | Detail |
| C2H4g20102 | 4:29,268,657-29,274,641 | - | C1H4g18422 | CX4g033249 | LOC_Os04g56850 | Os04g0664400 | OsARF11, OsMP | Detail |
| C2H4g00899 | 4:29,296,008-29,297,348 | + | C1H4g27904 | CX4g034957 | LOC_Os04g56900 | Os04g0664500 | OsAHT1 | Detail |
| C2H4g19479 | 4:29,299,350-29,300,699 | - | C1H4g27904 | CX4g035701 | LOC_Os04g56910 | Os04g0664600 | OsAHT2 | Detail |
| C2H4g29529 | 4:29,307,857-29,308,045 | - | C1H4g28826 | CX4g036377 | LOC_Os04g56920 | Os04g0664800 | - | Detail |
| C2H4g12473 | 4:29,308,394-29,310,189 | - | C1H4g28826 | CX4g036377 | LOC_Os04g56920 | Os04g0664800 | - | Detail |
| C2H4g26922 | 4:29,310,977-29,313,340 | - | C1H4g05011 | CX4g036377 | LOC_Os04g56930 | Os04g0664900 | - | Detail |
| C2H4g09681 | 4:29,314,042-29,316,157 | + | C1H4g08334 | CX4g034395 | - | Os04g0665000 | - | Detail |
| C2H4g19734 | 4:29,317,030-29,318,991 | - | C1H4g02808 | CX4g035345 | LOC_Os04g56950 | Os04g0665200 | IAMT1, OsIAMT1, OsSABATH4 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |