| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g25839 | 9:12,157,954-12,162,102 | + | C2H9g16912 | CX9g057257 | LOC_Os09g24710 | Os09g0413700 | - | Detail |
| C1H9g16168 | 9:12,184,054-12,185,196 | + | C2H9g05872 | CX9g055576 | LOC_Os09g24800 | Os09g0414300 | Os2R_MYB83 | Detail |
| C1H9g06201 | 9:12,203,735-12,204,076 | + | C2H8g26659 | CX8g052157 | LOC_Os09g24810 | Os09g0414500 | - | Detail |
| C1H9g27631 | 9:12,223,808-12,224,836 | - | C2H8g17645 | CX8g052157 | LOC_Os09g24820 | Os09g0466400 | OsZHD1 | Detail |
| C1H9g29440 | 9:12,241,409-12,242,580 | + | C2H9g10070 | CX9g057784 | LOC_Os09g24840 | Os09g0414900 | - | Detail |
| C1H9g27618 | 9:12,242,585-12,243,722 | - | C2H9g21296 | - | - | - | - | Detail |
| C1H9g17454 | 9:12,246,021-12,246,348 | - | C2H9g02971 | - | - | - | - | Detail |
| C1H9g06238 | 9:12,265,338-12,269,031 | + | C2H9g25855 | CX9g056267 | LOC_Os09g24900 | Os09g0415700 | - | Detail |
| C1H9g17729 | 9:12,269,022-12,276,246 | - | C2H9g19203 | CX9g055233 | LOC_Os09g24910 | Os09g0415800 | - | Detail |
| C1H9g31111 | 9:12,288,545-12,294,130 | + | C2H9g23439 | CX9g054854 | LOC_Os09g24924 | Os09g0416200 | OsSTP26 | Detail |
| C1H9g25465 | 9:12,297,086-12,302,691 | + | C2H9g14042 | CX9g057507 | LOC_Os09g24954 | Os09g0416500 | - | Detail |
| C1H9g23281 | 9:12,323,829-12,325,139 | + | C2H8g27178 | CX9g055245 | LOC_Os09g24970 | Os09g0416600 | - | Detail |
| C1H9g22850 | 9:12,328,776-12,332,188 | - | C2H9g28029 | CX9g057871 | LOC_Os09g24980 | Os09g0416700 | - | Detail |
| C1H9g27565 | 9:12,336,091-12,336,933 | + | C2H8g01898 | CX9g055408 | LOC_Os09g24990 | Os09g0416800 | OsCAF1G, OsCAF1-13 | Detail |
| C1H9g16627 | 9:12,346,458-12,348,003 | + | C2H9g01617 | CX9g057704 | LOC_Os09g25000 | Os09g0416900 | - | Detail |
| C1H9g10214 | 9:12,368,199-12,371,277 | - | C2H9g07186 | CX9g055541 | LOC_Os09g25040 | Os09g0417400 | - | Detail |
| C1H9g29068 | 9:12,379,351-12,381,198 | + | C2H9g01199 | CX9g055796 | LOC_Os09g25050 | Os09g0417500 | - | Detail |
| C1H9g04471 | 9:12,384,398-12,385,488 | - | C2H9g17545 | CX9g055243 | LOC_Os09g25060 | Os09g0417600 | WRKY76, OsWRKY76.3 | Detail |
| C1H9g20232 | 9:12,400,363-12,402,032 | - | C2H9g29801 | CX9g055795 | LOC_Os09g25070 | Os09g0417800 | WRKY62, OsWRKY62.2 | Detail |
| C1H9g05108 | 9:12,413,004-12,414,383 | - | C2H9g21780 | CX9g058068 | LOC_Os09g25090 | Os09g0418000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g25576 | 9:12,777,935-12,778,156 | + | C1H9g13617 | CX9g056019 | LOC_Os09g25314 | Os09g0420700 | - | Detail |
| C2H9g18572 | 9:12,782,612-12,788,144 | - | C1H9g09470 | CX9g058181 | LOC_Os09g25330 | Os09g0420900 | - | Detail |
| C2H9g09588 | 9:12,804,426-12,808,292 | - | C1H9g26024 | CX9g055908 | LOC_Os09g25370 | Os09g0421100 | - | Detail |
| C2H9g10962 | 9:12,809,236-12,823,129 | - | C1H9g02641 | CX9g057078 | LOC_Os09g25380 | Os09g0421200 | - | Detail |
| C2H9g17055 | 9:12,823,984-12,828,188 | - | C1H9g29866 | CX9g056194 | LOC_Os09g25390 | Os09g0421300 | - | Detail |
| C2H9g14095 | 9:12,832,365-12,833,599 | + | C1H9g17171 | CX9g054998 | LOC_Os09g25410 | Os09g0421500 | - | Detail |
| C2H9g26024 | 9:12,833,957-12,836,657 | - | C1H9g16363 | CX9g055874 | LOC_Os09g25420 | Os09g0421600 | - | Detail |
| C2H9g20999 | 9:12,839,299-12,840,468 | - | C1H9g13057 | CX9g057047 | LOC_Os09g25430 | Os09g0421700 | DRG9 | Detail |
| C2H9g15585 | 9:12,843,103-12,845,436 | - | C1H9g23603 | CX9g057707 | LOC_Os09g25440 | Os09g0421800 | - | Detail |
| C2H9g18547 | 9:12,848,446-12,853,193 | - | C1H9g04652 | CX9g057935 | LOC_Os09g25460 | Os09g0422000 | - | Detail |
| C2H9g29866 | 9:12,869,407-12,873,953 | + | C1H9g01940 | CX9g055442 | LOC_Os09g25490 | Os09g0422500 | BC6, Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9 | Detail |
| C2H9g13149 | 9:12,874,428-12,879,951 | - | C1H9g20433 | CX9g056791 | LOC_Os09g25500 | Os09g0422600 | - | Detail |
| C2H9g06178 | 9:12,889,719-12,893,440 | + | C1H9g21248 | CX9g057973 | LOC_Os09g25540 | Os09g0423200 | - | Detail |
| C2H9g01199 | 9:12,898,261-12,901,817 | + | C1H9g20875 | CX9g056726 | LOC_Os09g25550 | Os09g0423300 | - | Detail |
| C2H9g29489 | 9:12,902,678-12,907,732 | + | C1H9g17046 | CX9g056113 | LOC_Os09g25560 | Os09g0423400 | - | Detail |
| C2H9g01038 | 9:12,913,253-12,915,480 | + | C1H9g03392 | CX9g057440 | LOC_Os09g25570 | Os09g0423500 | - | Detail |
| C2H9g24507 | 9:12,917,396-12,924,317 | - | C1H9g16029 | CX9g057486 | LOC_Os09g25580 | Os09g0423600 | - | Detail |
| C2H9g10831 | 9:12,926,262-12,928,245 | + | C1H9g26575 | CX9g055033 | LOC_Os09g25590 | Os09g0423700 | - | Detail |
| C2H9g19598 | 9:12,932,780-12,935,194 | + | C1H9g05792 | CX9g056085 | - | Os09g0423800 | - | Detail |
| C2H9g25061 | 9:12,936,412-12,936,990 | + | C1H9g02235 | CX9g056085 | - | Os09g0423800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |