| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g21441 | 9:11,837,579-11,837,863 | + | - | - | LOC_Os09g24190 | Os09g0407050 | - | Detail |
| C1H9g24650 | 9:11,841,360-11,845,307 | + | C2H9g24241 | CX9g055965 | LOC_Os09g24200 | Os09g0407200 | - | Detail |
| C1H9g23904 | 9:11,850,864-11,853,754 | - | C2H9g02820 | CX9g057203 | LOC_Os09g24210 | Os09g0407300 | - | Detail |
| C1H9g02293 | 9:11,859,682-11,868,487 | + | C2H9g29912 | CX9g055864 | LOC_Os09g24220 | Os09g0407600 | OsMSH6 | Detail |
| C1H9g08629 | 9:11,869,421-11,871,457 | - | C2H9g01717 | CX9g056314 | LOC_Os09g24230 | Os09g0407700 | - | Detail |
| C1H9g09192 | 9:11,873,433-11,875,175 | - | C2H9g08999 | CX9g057332 | LOC_Os09g24240 | Os09g0407800 | - | Detail |
| C1H9g08004 | 9:11,876,808-11,881,498 | - | C2H9g04820 | CX9g055255 | LOC_Os09g24250 | Os09g0407900 | - | Detail |
| C1H9g20631 | 9:11,886,820-11,898,884 | + | C2H9g21364 | CX9g056605 | LOC_Os09g24260 | Os09g0408000 | - | Detail |
| C1H9g14259 | 9:11,919,586-11,923,670 | + | C2H9g07349 | CX10g008425 | LOC_Os09g24290 | Os09g0408300 | - | Detail |
| C1H9g31260 | 9:11,937,386-11,937,640 | + | C2H9g01448 | CX9g055135 | LOC_Os09g24310 | Os09g0408550 | - | Detail |
| C1H9g05602 | 9:11,938,276-11,941,057 | - | C2H9g08954 | CX9g058200 | LOC_Os09g24320 | Os09g0408600 | - | Detail |
| C1H9g31476 | 9:11,947,263-11,948,128 | + | C2H9g03900 | CX9g055752 | LOC_Os09g24330 | Os09g0314800 | - | Detail |
| C1H9g18300 | 9:11,951,879-11,953,084 | + | C2H9g12250 | CX9g057158 | LOC_Os09g24330 | Os09g0408900 | - | Detail |
| C1H9g05049 | 9:11,959,051-11,959,440 | - | - | CX9g055835 | LOC_Os09g24350 | Os09g0409000 | - | Detail |
| C1H9g21449 | 9:11,964,903-11,965,265 | - | - | - | LOC_Os09g24370 | Os09g0409100 | - | Detail |
| C1H9g04735 | 9:11,976,286-11,992,810 | + | C2H9g10480 | CX9g057897 | LOC_Os09g24440 | Os09g0410300 | TAF2 | Detail |
| C1H9g12574 | 9:11,994,347-11,999,137 | + | C2H9g06736 | CX9g055674 | - | - | - | Detail |
| C1H9g09322 | 9:12,000,673-12,001,999 | + | C2H9g06736 | - | - | Os09g0410400 | - | Detail |
| C1H9g03060 | 9:12,015,454-12,016,266 | + | - | CX9g055392 | LOC_Os09g24480 | Os09g0410500 | REP1, SDP1 | Detail |
| C1H9g03911 | 9:12,029,967-12,030,353 | + | C2H9g10864 | - | - | Os09g0315700 | Osppc2b | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g21434 | 3:10,641,439-10,643,405 | - | C1H3g21528 | CX3g025537 | LOC_Os03g21040 | Os03g0327600 | OsEULD1b | Detail |
| C2H3g30453 | 3:10,654,783-10,655,310 | - | C1H3g10132 | CX3g025194 | LOC_Os03g17850 | Os03g0793100 | - | Detail |
| C2H3g22568 | 3:10,659,900-10,661,693 | - | C1H3g19758 | CX3g030838 | LOC_Os03g21060 | Os03g0327800 | NAC58, OsNAP, ONAC058, ONAC58, PS1 | Detail |
| C2H3g01320 | 3:10,678,060-10,692,223 | + | C1H3g10903 | CX3g029575 | LOC_Os03g21080 | Os03g0328000 | OsSPK1 | Detail |
| C2H3g29789 | 3:10,692,664-10,696,424 | - | C1H3g31035 | CX3g027049 | LOC_Os03g21090 | Os03g0328100 | - | Detail |
| C2H3g13174 | 3:10,700,149-10,701,606 | + | C1H3g04874 | CX3g029317 | LOC_Os03g21110 | Os03g0328300 | - | Detail |
| C2H3g07542 | 3:10,702,222-10,707,739 | - | C1H3g01487 | CX3g030285 | LOC_Os03g21120 | Os03g0328400 | OsAPY1 | Detail |
| C2H3g24667 | 3:10,727,333-10,731,715 | + | C1H3g07714 | CX3g028818 | LOC_Os03g21140 | Os03g0328900 | - | Detail |
| C2H3g06727 | 3:10,752,571-10,756,320 | + | C1H3g05140 | CX3g027853 | LOC_Os03g21160 | Os03g0329200 | - | Detail |
| C2H3g01256 | 3:10,771,081-10,774,744 | - | C1H3g26417 | CX3g029596 | LOC_Os03g21210 | Os03g0329500 | OsGH9A1, OsGLU1 | Detail |
| C2H3g20489 | 3:10,786,945-10,792,264 | + | C1H3g12540 | CX3g030183 | LOC_Os03g21230 | Os03g0329700 | - | Detail |
| C2H3g04364 | 3:10,795,722-10,800,922 | + | C1H3g04812 | CX3g028538 | LOC_Os03g21240 | Os03g0329900 | PHR1, OsPHR1 | Detail |
| C2H3g14604 | 3:10,803,141-10,808,363 | - | C1H3g28228 | CX3g025595 | LOC_Os03g21250 | Os03g0330000 | - | Detail |
| C2H3g27204 | 3:10,818,910-10,823,205 | + | C1H3g13172 | CX3g026436 | LOC_Os03g21260 | Os03g0330200 | - | Detail |
| C2H3g15921 | 3:10,823,679-10,830,154 | - | C1H3g07101 | CX3g027510 | LOC_Os03g21270 | Os03g0330300 | - | Detail |
| C2H3g16525 | 3:10,856,932-10,860,314 | + | C1H3g17399 | CX3g030370 | LOC_Os03g21370 | Os03g0331600 | CS3, OsLCAA | Detail |
| C2H3g29448 | 3:10,862,540-10,863,112 | - | C1H3g03324 | CX3g028976 | LOC_Os03g21380 | Os03g0331700 | - | Detail |
| C2H3g00436 | 3:10,868,264-10,869,892 | + | C1H3g28515 | CX3g026949 | LOC_Os03g21390 | Os03g0331900 | - | Detail |
| C2H3g08774 | 3:10,872,406-10,875,995 | - | C1H3g12262 | CX3g025397 | LOC_Os03g21400 | Os03g0332100 | CYP714B2 | Detail |
| C2H3g14433 | 3:10,879,666-10,880,491 | - | C1H3g15931 | CX3g025397 | LOC_Os03g21419 | Os03g0332100 | CYP714B2 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |