| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g01326 | 1:30,278,642-30,283,698 | + | C2H1g24587 | CX1g000361 | LOC_Os01g58790 | Os01g0802100 | OsIspE, IspE, OsCMK, CMK | Detail |
| C1H1g24285 | 1:30,284,058-30,284,504 | - | C2H5g09380 | CX1g004944 | LOC_Os01g58800 | Os01g0802200 | - | Detail |
| C1H1g07782 | 1:30,290,357-30,291,268 | + | C2H5g19411 | CX1g004781 | LOC_Os01g58850 | Os01g0802600 | - | Detail |
| C1H1g15075 | 1:30,297,546-30,299,729 | - | C2H1g08686 | CX1g002565 | LOC_Os01g58860 | Os01g0802700 | OsPIN9 | Detail |
| C1H1g08773 | 1:30,305,163-30,306,251 | - | C2H1g10922 | CX1g003630 | LOC_Os01g58870 | Os01g0802850 | - | Detail |
| C1H1g24422 | 1:30,320,510-30,321,291 | + | C2H1g30330 | CX1g002172 | LOC_Os01g58890 | Os01g0803200 | - | Detail |
| C1H1g07293 | 1:30,332,316-30,334,119 | - | C2H1g25597 | CX1g000223 | LOC_Os01g58910 | Os01g0803300 | - | Detail |
| C1H1g24602 | 1:30,349,786-30,351,309 | + | C2H1g05023 | CX1g002651 | LOC_Os01g58960 | Os01g0803800 | CYP94D12, OsCYP94D12 | Detail |
| C1H1g19345 | 1:30,352,665-30,354,203 | + | C2H1g26033 | CX1g005013 | LOC_Os01g58970 | Os01g0803900 | CYP94D11, OsCYP94D11, OsCYPq1 | Detail |
| C1H1g07529 | 1:30,369,415-30,370,950 | + | C2H1g05023 | CX1g005013 | LOC_Os01g59020 | Os01g0804400 | CYP94D7, OsCYP94D7 | Detail |
| C1H1g00313 | 1:30,374,422-30,375,975 | + | C2H1g05023 | CX1g005013 | LOC_Os01g59050 | Os01g0804900 | CYP94D6, OsCYP94D6 | Detail |
| C1H1g26715 | 1:30,377,934-30,378,206 | - | C2H1g28126 | CX1g005195 | LOC_Os01g59060 | Os01g0805000 | - | Detail |
| C1H1g18258 | 1:30,378,461-30,379,822 | + | - | CX1g004717 | LOC_Os01g59070 | Os01g0805100 | - | Detail |
| C1H1g02848 | 1:30,380,989-30,382,207 | - | C2H1g18483 | CX1g000028 | LOC_Os01g59080 | Os01g0805200 | - | Detail |
| C1H1g13654 | 1:30,382,319-30,388,020 | + | C2H1g25136 | CX1g000520 | LOC_Os01g59100 | Os01g0805400 | Os6 | Detail |
| C1H1g23718 | 1:30,390,452-30,392,930 | + | C2H1g05127 | CX1g002439 | LOC_Os01g59110 | Os01g0805500 | - | Detail |
| C1H1g31482 | 1:30,393,285-30,396,383 | - | C2H1g05794 | CX1g004982 | LOC_Os01g59120 | Os01g0805600 | Orysa;CycB1;1 | Detail |
| C1H1g30942 | 1:30,397,326-30,403,604 | - | C2H1g03484 | CX1g001600 | LOC_Os01g59130 | Os01g0805700 | - | Detail |
| C1H1g01953 | 1:30,405,204-30,408,876 | - | C2H1g17768 | CX1g000155 | LOC_Os01g59140 | Os01g0805800 | - | Detail |
| C1H1g21118 | 1:30,410,297-30,413,952 | + | C2H1g29760 | CX1g003536 | LOC_Os01g59150 | Os01g0805900 | Ostub16, OsTUB4 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g23743 | 1:5,305,835-5,306,335 | - | - | CX1g004127 | LOC_Os01g11240 | Os01g0210600 | - | Detail |
| C2H1g02275 | 1:5,314,040-5,318,157 | + | C1H1g15458 | - | - | Os01g0210750 | - | Detail |
| C2H1g05349 | 1:5,315,079-5,318,927 | - | C1H1g12886 | CX1g002610 | LOC_Os01g11250 | Os01g0210700 | KAT2, OsKAT2 | Detail |
| C2H1g07302 | 1:5,324,139-5,328,648 | + | C1H1g30027 | CX1g004526 | LOC_Os01g11260 | Os01g0210800 | - | Detail |
| C2H1g29439 | 1:5,330,062-5,331,597 | - | C1H1g11954 | CX1g005082 | LOC_Os01g11270 | Os01g0210900 | - | Detail |
| C2H1g23127 | 1:5,353,535-5,355,070 | - | C1H1g11954 | CX1g000827 | LOC_Os01g11300 | Os01g0211200 | - | Detail |
| C2H1g26875 | 1:5,363,256-5,364,782 | - | C1H1g11954 | CX1g005082 | LOC_Os01g11340 | Os01g0211600 | - | Detail |
| C2H1g05400 | 1:5,376,702-5,378,036 | - | C1H1g07906 | - | LOC_Os01g11350 | Os01g0211800 | - | Detail |
| C2H1g30364 | 1:5,392,325-5,404,996 | + | C1H1g25024 | CX1g006413 | LOC_Os01g11370 | Os01g0212100 | - | Detail |
| C2H1g07400 | 1:5,413,173-5,418,384 | + | C1H1g24516 | CX1g004990 | LOC_Os01g11414 | Os01g0212400 | - | Detail |
| C2H1g07852 | 1:5,419,207-5,420,699 | - | C1H1g10197 | CX1g007192 | LOC_Os01g11430 | Os01g0212500 | OsTIE1 | Detail |
| C2H1g19820 | 1:5,428,807-5,429,451 | - | - | - | - | - | - | Detail |
| C2H1g19922 | 1:5,447,110-5,450,771 | - | C1H1g26340 | CX1g001182 | LOC_Os01g11460 | Os01g0212700 | - | Detail |
| C2H1g21565 | 1:5,452,260-5,452,775 | - | C1H1g26340 | CX1g001182 | LOC_Os01g11480 | Os01g0673900 | - | Detail |
| C2H1g00533 | 1:5,455,349-5,456,053 | - | C1H1g22295 | CX1g001182 | LOC_Os01g11490 | Os01g0213100 | - | Detail |
| C2H1g20430 | 1:5,459,163-5,459,843 | - | C1H1g24050 | CX1g001182 | LOC_Os01g11500 | Os01g0213100 | - | Detail |
| C2H1g03845 | 1:5,462,634-5,464,451 | + | - | CX1g000251 | LOC_Os01g11510 | Os01g0213300 | - | Detail |
| C2H1g20281 | 1:5,470,874-5,471,578 | - | C1H1g26340 | CX1g001182 | LOC_Os01g11520 | Os01g0213400 | - | Detail |
| C2H1g27187 | 1:5,486,799-5,488,694 | - | C1H1g28036 | CX1g004394 | LOC_Os01g11550 | Os01g0213800 | OsPCF5, PCF5, OsTCP1, OsTCP1/PCF5 | Detail |
| C2H1g17634 | 1:5,519,687-5,522,015 | - | C1H1g17492 | CX1g003866 | LOC_Os01g11570 | Os01g0214200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |