| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g01326 | 1:30,278,642-30,283,698 | + | C2H1g24587 | CX1g000361 | LOC_Os01g58790 | Os01g0802100 | OsIspE, IspE, OsCMK, CMK | Detail |
| C1H1g24285 | 1:30,284,058-30,284,504 | - | C2H5g09380 | CX1g004944 | LOC_Os01g58800 | Os01g0802200 | - | Detail |
| C1H1g07782 | 1:30,290,357-30,291,268 | + | C2H5g19411 | CX1g004781 | LOC_Os01g58850 | Os01g0802600 | - | Detail |
| C1H1g15075 | 1:30,297,546-30,299,729 | - | C2H1g08686 | CX1g002565 | LOC_Os01g58860 | Os01g0802700 | OsPIN9 | Detail |
| C1H1g08773 | 1:30,305,163-30,306,251 | - | C2H1g10922 | CX1g003630 | LOC_Os01g58870 | Os01g0802850 | - | Detail |
| C1H1g24422 | 1:30,320,510-30,321,291 | + | C2H1g30330 | CX1g002172 | LOC_Os01g58890 | Os01g0803200 | - | Detail |
| C1H1g07293 | 1:30,332,316-30,334,119 | - | C2H1g25597 | CX1g000223 | LOC_Os01g58910 | Os01g0803300 | - | Detail |
| C1H1g24602 | 1:30,349,786-30,351,309 | + | C2H1g05023 | CX1g002651 | LOC_Os01g58960 | Os01g0803800 | CYP94D12, OsCYP94D12 | Detail |
| C1H1g19345 | 1:30,352,665-30,354,203 | + | C2H1g26033 | CX1g005013 | LOC_Os01g58970 | Os01g0803900 | CYP94D11, OsCYP94D11, OsCYPq1 | Detail |
| C1H1g07529 | 1:30,369,415-30,370,950 | + | C2H1g05023 | CX1g005013 | LOC_Os01g59020 | Os01g0804400 | CYP94D7, OsCYP94D7 | Detail |
| C1H1g00313 | 1:30,374,422-30,375,975 | + | C2H1g05023 | CX1g005013 | LOC_Os01g59050 | Os01g0804900 | CYP94D6, OsCYP94D6 | Detail |
| C1H1g26715 | 1:30,377,934-30,378,206 | - | C2H1g28126 | CX1g005195 | LOC_Os01g59060 | Os01g0805000 | - | Detail |
| C1H1g18258 | 1:30,378,461-30,379,822 | + | - | CX1g004717 | LOC_Os01g59070 | Os01g0805100 | - | Detail |
| C1H1g02848 | 1:30,380,989-30,382,207 | - | C2H1g18483 | CX1g000028 | LOC_Os01g59080 | Os01g0805200 | - | Detail |
| C1H1g13654 | 1:30,382,319-30,388,020 | + | C2H1g25136 | CX1g000520 | LOC_Os01g59100 | Os01g0805400 | Os6 | Detail |
| C1H1g23718 | 1:30,390,452-30,392,930 | + | C2H1g05127 | CX1g002439 | LOC_Os01g59110 | Os01g0805500 | - | Detail |
| C1H1g31482 | 1:30,393,285-30,396,383 | - | C2H1g05794 | CX1g004982 | LOC_Os01g59120 | Os01g0805600 | Orysa;CycB1;1 | Detail |
| C1H1g30942 | 1:30,397,326-30,403,604 | - | C2H1g03484 | CX1g001600 | LOC_Os01g59130 | Os01g0805700 | - | Detail |
| C1H1g01953 | 1:30,405,204-30,408,876 | - | C2H1g17768 | CX1g000155 | LOC_Os01g59140 | Os01g0805800 | - | Detail |
| C1H1g21118 | 1:30,410,297-30,413,952 | + | C2H1g29760 | CX1g003536 | LOC_Os01g59150 | Os01g0805900 | Ostub16, OsTUB4 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g19266 | 1:31,509,696-31,513,272 | - | C1H1g00383 | CX1g001311 | LOC_Os01g61580 | Os01g0832200 | - | Detail |
| C2H1g14897 | 1:31,519,060-31,524,680 | + | C1H1g00574 | CX1g004790 | LOC_Os01g61590 | Os01g0832300 | OsCPK3 | Detail |
| C2H1g11131 | 1:31,539,536-31,545,198 | + | C1H1g31694 | CX1g000601 | LOC_Os01g61610 | Os01g0832600 | - | Detail |
| C2H1g22191 | 1:31,557,505-31,562,700 | + | C1H1g07002 | CX1g006439 | LOC_Os01g61620 | Os01g0832900 | - | Detail |
| C2H1g03571 | 1:31,563,054-31,565,051 | + | C1H1g10107 | CX1g006609 | LOC_Os01g61630 | Os01g0833000 | - | Detail |
| C2H1g17085 | 1:31,565,343-31,568,129 | - | C1H1g13635 | CX1g003404 | LOC_Os01g61640 | Os01g0833100 | - | Detail |
| C2H1g00983 | 1:31,572,935-31,573,270 | + | C1H1g07003 | CX1g003333 | LOC_Os01g61670 | Os01g0833150 | - | Detail |
| C2H1g27052 | 1:31,573,508-31,576,185 | + | C1H1g07003 | CX1g003333 | LOC_Os01g61670 | Os01g0833200 | - | Detail |
| C2H1g24837 | 1:31,577,218-31,577,884 | + | C1H1g07552 | CX1g005332 | LOC_Os01g61680 | Os01g0833400 | - | Detail |
| C2H1g22767 | 1:31,578,637-31,582,534 | - | C1H1g26345 | CX1g001176 | LOC_Os01g61690 | Os01g0833500 | - | Detail |
| C2H1g05497 | 1:31,583,766-31,584,739 | - | C1H1g02922 | CX1g000140 | LOC_Os01g61700 | Os01g0833600 | - | Detail |
| C2H1g26726 | 1:31,585,550-31,592,623 | - | C1H1g09497 | CX1g003313 | LOC_Os01g61710 | Os01g0833700 | - | Detail |
| C2H1g11920 | 1:31,594,680-31,598,908 | - | C1H1g22933 | CX1g003450 | LOC_Os01g61720 | Os01g0833800 | - | Detail |
| C2H1g18321 | 1:31,610,325-31,616,645 | + | C1H1g06428 | CX1g005181 | - | Os01g0663400 | - | Detail |
| C2H1g11202 | 1:31,625,734-31,626,432 | + | C1H1g08789 | - | LOC_Os01g61750 | - | - | Detail |
| C2H1g03973 | 1:31,626,307-31,630,738 | - | C1H1g12416 | CX1g000146 | LOC_Os01g61760 | Os01g0834100 | - | Detail |
| C2H1g25411 | 1:31,635,422-31,646,181 | + | C1H1g06212 | CX1g002696 | LOC_Os01g61780 | Os01g0834200 | - | Detail |
| C2H1g04378 | 1:31,652,315-31,654,763 | - | C1H1g30061 | CX1g000392 | LOC_Os01g61810 | Os01g0834400 | HAP3A, OsHAP3A, OsNF-YB-2, NFYB2 | Detail |
| C2H1g11057 | 1:31,654,816-31,655,016 | - | C1H1g30061 | CX1g000392 | LOC_Os01g61810 | Os01g0834400 | HAP3A, OsHAP3A, OsNF-YB-2, NFYB2 | Detail |
| C2H1g10042 | 1:31,660,441-31,661,642 | - | C1H1g07712 | CX1g001710 | LOC_Os01g61814 | Os01g0834500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |