| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g11219 | 9:11,219,575-11,224,504 | + | C2H9g01293 | CX9g057799 | LOC_Os09g22540 | Os09g0393200 | OsJMJ718 | Detail |
| C1H9g27811 | 9:11,225,744-11,227,026 | + | - | - | - | - | - | Detail |
| C1H9g30997 | 9:11,249,210-11,249,599 | - | C2H9g12185 | CX9g057399 | - | Os09g0393501 | - | Detail |
| C1H9g16300 | 9:11,249,722-11,250,111 | + | C2H9g07203 | CX9g057399 | - | Os09g0393801 | - | Detail |
| C1H9g14500 | 9:11,251,642-11,256,673 | - | C2H9g12185 | CX9g057399 | LOC_Os09g23070 | Os09g0394100 | - | Detail |
| C1H9g09905 | 9:11,258,995-11,268,476 | - | C2H9g15186 | CX9g057598 | LOC_Os09g23084 | Os09g0394300 | - | Detail |
| C1H9g21012 | 9:11,284,272-11,288,513 | + | C2H9g25736 | CX9g057002 | LOC_Os09g23110 | Os09g0452300 | OspGlcT4 | Detail |
| C1H9g11161 | 9:11,295,068-11,297,057 | - | C2H9g21887 | CX9g057018 | LOC_Os09g23140 | Os09g0394600 | - | Detail |
| C1H9g04354 | 9:11,301,798-11,305,812 | - | C2H9g21887 | CX9g056382 | LOC_Os09g23150 | Os09g0394700 | - | Detail |
| C1H9g06730 | 9:11,306,250-11,306,810 | - | C2H9g21753 | - | - | - | - | Detail |
| C1H9g07311 | 9:11,311,587-11,316,610 | + | C2H9g12341 | CX9g056041 | LOC_Os09g23160 | Os09g0394900 | - | Detail |
| C1H9g00378 | 9:11,367,073-11,373,898 | + | C2H9g06605 | CX9g057525 | LOC_Os09g23200 | Os09g0395300 | RL9, rl9, OsADD1 | Detail |
| C1H9g06586 | 9:11,387,716-11,389,122 | - | C2H9g01641 | CX9g056960 | LOC_Os09g23220 | Os09g0395600 | - | Detail |
| C1H9g04135 | 9:11,400,699-11,403,472 | + | C2H9g28359 | CX9g056289 | LOC_Os09g23280 | Os09g0396300 | - | Detail |
| C1H9g25860 | 9:11,428,690-11,430,473 | + | C2H9g19158 | CX9g055871 | LOC_Os09g23300 | Os09g0396900 | OsVIT2 | Detail |
| C1H9g21880 | 9:11,434,485-11,435,544 | + | C2H9g08261 | - | LOC_Os09g23334 | Os09g0397100 | - | Detail |
| C1H9g26099 | 9:11,439,494-11,442,430 | + | C2H9g14156 | - | LOC_Os09g23334 | Os09g0397100 | - | Detail |
| C1H9g00991 | 9:11,443,689-11,444,699 | + | C2H9g00794 | - | LOC_Os09g23340 | Os09g0397200 | - | Detail |
| C1H9g07186 | 9:11,462,035-11,466,414 | + | C2H9g25337 | CX9g056954 | LOC_Os09g23350 | Os09g0397300 | - | Detail |
| C1H9g18089 | 9:11,467,425-11,470,626 | - | C2H9g27674 | CX9g057642 | LOC_Os09g23360 | Os09g0397400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H6g28900 | 6:5,697,135-5,698,193 | + | C1H6g15439 | CX6g044911 | LOC_Os06g12360 | Os06g0228950 | - | Detail |
| C2H6g05024 | 6:5,698,908-5,701,872 | - | C1H6g14481 | CX6g043477 | LOC_Os06g12370 | Os06g0229000 | - | Detail |
| C2H6g02329 | 6:5,710,871-5,716,601 | + | C1H6g30867 | CX6g043791 | LOC_Os06g12390 | Os06g0229200 | GalT | Detail |
| C2H6g13941 | 6:5,719,681-5,727,442 | + | C1H6g06761 | CX6g041469 | LOC_Os06g12400 | Os06g0229300 | - | Detail |
| C2H6g19443 | 6:5,728,867-5,730,473 | + | C1H6g31791 | CX6g045028 | LOC_Os06g12410 | Os06g0257600 | - | Detail |
| C2H6g15100 | 6:5,731,963-5,736,797 | + | C1H6g30269 | CX6g044435 | LOC_Os06g12450 | Os06g0229800 | ALK, alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6 | Detail |
| C2H6g02967 | 6:5,741,601-5,746,594 | + | C1H6g02539 | CX6g041722 | LOC_Os06g12460 | Os06g0230100 | OsCSLA3 | Detail |
| C2H6g18393 | 6:5,755,045-5,755,854 | + | C1H6g20958 | CX6g043899 | LOC_Os06g12500 | Os06g0231050 | CASP3, OsCASP3 | Detail |
| C2H6g07579 | 6:5,756,527-5,758,080 | - | C1H6g22566 | CX6g042564 | LOC_Os06g12510 | Os06g0231100 | - | Detail |
| C2H6g25430 | 6:5,760,221-5,762,376 | + | C1H6g10940 | CX6g042953 | LOC_Os06g12530 | Os06g0231300 | ROX3 | Detail |
| C2H6g00549 | 6:5,762,707-5,764,524 | - | C1H6g22566 | CX6g044108 | LOC_Os06g03570 | Os06g0231400 | - | Detail |
| C2H6g20507 | 6:5,770,817-5,773,183 | - | C1H6g09372 | CX6g042127 | LOC_Os06g12560 | Os06g0231600 | - | Detail |
| C2H6g04942 | 6:5,776,967-5,780,407 | - | C1H6g21654 | CX6g045497 | LOC_Os06g12580 | Os06g0232000 | - | Detail |
| C2H6g06021 | 6:5,784,696-5,794,631 | - | C1H6g16903 | CX6g044039 | LOC_Os06g12590 | Os06g0232100 | - | Detail |
| C2H6g20456 | 6:5,804,890-5,810,664 | + | C1H6g16972 | CX6g043544 | LOC_Os06g12600 | Os06g0232200 | OsFRK3 | Detail |
| C2H6g11066 | 6:5,828,992-5,832,397 | + | C1H6g17211 | CX6g041379 | LOC_Os06g12610 | Os06g0232300 | OsPIN1a | Detail |
| C2H6g00896 | 6:5,829,312-5,830,534 | - | - | - | - | Os06g0232350 | - | Detail |
| C2H6g26342 | 6:5,837,559-5,838,065 | - | C1H6g01622 | CX6g043622 | LOC_Os06g12620 | Os06g0232400 | - | Detail |
| C2H6g04539 | 6:5,851,234-5,854,132 | - | C1H6g13976 | CX6g045802 | LOC_Os06g12630 | Os06g0232600 | - | Detail |
| C2H6g12736 | 6:5,855,278-5,858,915 | + | C1H6g19729 | - | LOC_Os06g12640 | Os06g0232700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |