| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g29598 | 9:9,987,154-9,992,163 | + | C2H9g06733 | CX9g057137 | LOC_Os09g19830 | Os09g0362900 | - | Detail |
| C1H9g06456 | 9:9,998,582-10,003,189 | + | C2H9g18853 | CX9g055594 | LOC_Os09g19850 | Os09g0363100 | AL2 | Detail |
| C1H9g17470 | 9:10,003,276-10,009,703 | + | C2H9g21274 | CX9g054946 | LOC_Os09g19880 | Os09g0363400 | - | Detail |
| C1H9g09576 | 9:10,011,993-10,015,658 | + | C2H9g19173 | CX9g055913 | LOC_Os09g19890 | Os09g0363500 | - | Detail |
| C1H9g19156 | 9:10,017,106-10,020,441 | - | C2H9g30170 | CX9g056843 | LOC_Os09g19900 | Os09g0363600 | - | Detail |
| C1H9g05940 | 9:10,021,808-10,023,145 | - | C2H9g24242 | CX9g056665 | LOC_Os09g19910 | Os09g0363700 | - | Detail |
| C1H9g13676 | 9:10,024,239-10,027,965 | + | C2H9g24130 | CX9g057760 | LOC_Os09g19920 | Os09g0363800 | - | Detail |
| C1H9g20675 | 9:10,027,843-10,034,266 | - | C2H9g06894 | CX9g055111 | LOC_Os09g19930 | Os09g0363900 | ONI3 | Detail |
| C1H9g06801 | 9:10,045,482-10,047,298 | + | C2H9g24304 | CX9g058154 | LOC_Os09g19940 | Os09g0364000 | - | Detail |
| C1H9g25007 | 9:10,050,355-10,051,461 | + | - | CX9g055190 | LOC_Os09g19950 | Os09g0364100 | - | Detail |
| C1H9g15961 | 9:10,057,125-10,057,901 | + | - | CX9g055904 | LOC_Os09g19970 | Os09g0364400 | - | Detail |
| C1H9g01896 | 9:10,059,074-10,062,091 | + | C2H9g26597 | CX9g055401 | LOC_Os09g19980 | Os09g0364500 | - | Detail |
| C1H9g22808 | 9:10,072,217-10,073,287 | + | C2H9g05953 | CX9g055642 | LOC_Os09g20000 | Os09g0364800 | - | Detail |
| C1H9g18906 | 9:10,085,555-10,086,658 | + | C2H9g17518 | CX9g054992 | LOC_Os09g20010 | Os09g0364900 | - | Detail |
| C1H9g09897 | 9:10,127,643-10,132,263 | - | C2H9g05844 | CX9g055654 | LOC_Os09g20090 | Os09g0365900 | OsORAP1, OsAAO4 | Detail |
| C1H9g15571 | 9:10,216,321-10,217,602 | - | C2H9g09091 | CX9g054852 | LOC_Os09g20200 | - | - | Detail |
| C1H9g30784 | 9:10,228,975-10,229,292 | + | - | - | - | - | - | Detail |
| C1H9g02207 | 9:10,229,355-10,229,974 | + | C2H9g29920 | CX9g056871 | LOC_Os09g20240 | Os09g0367900 | - | Detail |
| C1H9g30662 | 9:10,249,689-10,251,212 | - | C2H9g28312 | CX9g056709 | LOC_Os09g20260 | Os09g0368200 | - | Detail |
| C1H9g08171 | 9:10,253,525-10,254,719 | - | C2H9g01995 | CX9g056709 | LOC_Os09g20284 | Os09g0368200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g00465 | 4:21,949,305-21,949,736 | - | C1H4g16892 | - | LOC_Os04g42850 | - | - | Detail |
| C2H4g23428 | 4:21,955,992-21,961,795 | + | C1H4g02011 | CX4g033250 | LOC_Os04g42860 | Os04g0507700 | - | Detail |
| C2H4g12434 | 4:21,962,396-21,964,296 | - | C1H4g25437 | CX4g036242 | LOC_Os04g42870 | Os04g0507800 | - | Detail |
| C2H4g04255 | 4:21,964,471-21,966,166 | + | C1H4g05518 | CX4g032853 | LOC_Os04g42880 | Os04g0507900 | - | Detail |
| C2H4g13577 | 4:21,969,979-21,970,602 | - | - | CX4g035638 | LOC_Os04g42889 | - | - | Detail |
| C2H4g02916 | 4:21,971,608-21,974,671 | - | C1H4g12307 | CX4g033139 | LOC_Os04g42900 | Os04g0508000 | - | Detail |
| C2H4g04232 | 4:21,975,336-21,978,353 | + | C1H4g06876 | CX4g032690 | LOC_Os04g42910 | Os04g0508100 | - | Detail |
| C2H4g05860 | 4:21,979,292-21,984,831 | + | C1H4g08533 | CX4g033875 | LOC_Os04g42920 | Os04g0508200 | - | Detail |
| C2H4g05577 | 4:21,986,204-21,988,757 | + | C1H4g17316 | CX4g035105 | LOC_Os04g42930 | Os04g0508300 | OsGrxC2.2 | Detail |
| C2H4g08577 | 4:21,989,395-21,990,537 | - | - | CX4g036552 | LOC_Os04g42940 | Os04g0508400 | - | Detail |
| C2H4g24307 | 4:21,993,729-21,995,690 | - | C1H4g28976 | CX4g036081 | LOC_Os04g42950 | Os04g0508500 | Os2R_MYB45 | Detail |
| C2H4g01800 | 4:22,005,104-22,006,447 | + | C1H2g19268 | CX4g034855 | LOC_Os04g42960 | Os04g0508600 | - | Detail |
| C2H4g15606 | 4:22,010,532-22,014,498 | - | C1H4g09744 | CX4g031554 | LOC_Os04g42980 | Os04g0508800 | - | Detail |
| C2H4g18756 | 4:22,019,614-22,023,317 | - | C1H4g09860 | CX4g035042 | LOC_Os04g42990 | Os04g0508900 | - | Detail |
| C2H4g21092 | 4:22,032,568-22,038,012 | + | C1H4g03726 | CX4g031481 | LOC_Os04g43020 | Os04g0509000 | - | Detail |
| C2H4g17989 | 4:22,038,821-22,046,565 | + | C1H4g25656 | CX4g035238 | LOC_Os04g43030 | Os04g0509100 | - | Detail |
| C2H4g25209 | 4:22,046,130-22,049,928 | - | C1H4g05629 | CX4g036052 | LOC_Os04g43040 | Os04g0509200 | - | Detail |
| C2H4g20441 | 4:22,052,563-22,073,010 | - | C1H4g11981 | CX4g034232 | LOC_Os04g43050 | Os04g0509300 | DCL4, OsDCL4, Os DCL4, Dcl4 | Detail |
| C2H4g11339 | 4:22,075,791-22,076,232 | + | C1H4g16776 | CX4g036588 | LOC_Os04g43060 | Os04g0509400 | - | Detail |
| C2H4g01906 | 4:22,082,684-22,084,180 | + | C1H4g16652 | CX2g024932 | LOC_Os04g43070 | Os04g0509600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |