| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g25712 | 9:5,287,553-5,298,738 | + | C2H9g03130 | CX9g056789 | LOC_Os09g10840 | Os09g0280500 | - | Detail |
| C1H9g13805 | 9:5,304,655-5,309,889 | - | C2H9g29830 | CX9g056465 | LOC_Os09g10850 | Os09g0280600 | OsMFS1 | Detail |
| C1H9g06262 | 9:5,357,097-5,362,271 | - | C2H9g25342 | CX9g056244 | LOC_Os09g10910 | Os09g0281300 | - | Detail |
| C1H9g30004 | 9:5,371,528-5,375,272 | + | C2H9g00970 | CX9g054856 | LOC_Os09g10930 | Os09g0281600 | - | Detail |
| C1H9g25733 | 9:5,377,086-5,380,760 | + | C2H9g25828 | CX9g055566 | LOC_Os09g10940 | Os09g0281700 | - | Detail |
| C1H9g02726 | 9:5,386,239-5,389,989 | + | C2H9g04057 | CX9g056551 | LOC_Os09g10950 | Os09g0281800 | - | Detail |
| C1H9g26657 | 9:5,395,841-5,408,387 | - | C2H9g06979 | CX9g056165 | LOC_Os09g10960 | Os09g0281900 | - | Detail |
| C1H9g17778 | 9:5,421,009-5,421,449 | - | C2H9g30281 | CX9g055297 | LOC_Os09g10980 | Os09g0282100 | - | Detail |
| C1H9g16588 | 9:5,425,233-5,425,751 | - | C2H9g26900 | CX9g058190 | LOC_Os09g10980 | Os09g0282300 | - | Detail |
| C1H9g28469 | 9:5,578,317-5,580,520 | + | C2H9g23549 | CX9g056406 | LOC_Os09g11170 | Os09g0283600 | - | Detail |
| C1H9g00489 | 9:5,642,513-5,647,115 | + | C2H9g02512 | CX9g058079 | LOC_Os09g11230 | Os09g0284200 | - | Detail |
| C1H9g17976 | 9:5,649,153-5,651,722 | + | C2H9g29412 | CX9g056754 | LOC_Os09g11240 | Os09g0284300 | - | Detail |
| C1H9g18575 | 9:5,655,634-5,658,836 | - | C2H9g18317 | CX9g055562 | LOC_Os09g11250 | Os09g0284400 | - | Detail |
| C1H9g18907 | 9:5,661,294-5,670,564 | - | C2H9g18253 | CX9g055837 | LOC_Os09g11270 | Os09g0284600 | - | Detail |
| C1H9g15150 | 9:5,681,699-5,682,651 | - | C2H9g29161 | CX9g055039 | LOC_Os05g20980 | - | - | Detail |
| C1H9g19420 | 9:5,694,832-5,697,479 | - | C2H9g20861 | CX9g054971 | LOC_Os09g11440 | Os09g0286300 | - | Detail |
| C1H9g09221 | 9:5,699,202-5,708,642 | - | C2H9g08679 | CX9g057306 | LOC_Os09g11450 | Os09g0286400 | OsNHX5, GPA6 | Detail |
| C1H9g28241 | 9:5,709,151-5,709,496 | - | C2H9g16456 | - | - | Os09g0286501 | - | Detail |
| C1H9g07448 | 9:5,715,035-5,715,721 | - | C2H9g10409 | CX9g057392 | LOC_Os09g11460 | Os09g0286600 | - | Detail |
| C1H9g15004 | 9:5,732,303-5,733,499 | - | C2H9g16518 | CX9g055054 | LOC_Os09g11480 | Os09g0287000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g08146 | 3:25,060,344-25,073,286 | + | C1H3g30763 | CX3g027759 | - | - | - | Detail |
| C2H3g06193 | 3:25,080,310-25,093,249 | - | C1H3g31689 | CX3g025545 | LOC_Os03g48140 | Os03g0686300 | - | Detail |
| C2H3g15650 | 3:25,099,612-25,102,820 | + | C1H3g17077 | CX3g025241 | LOC_Os03g48160 | Os03g0253100 | - | Detail |
| C2H3g12008 | 3:25,104,383-25,108,435 | + | C1H3g31064 | CX3g025276 | LOC_Os03g48170 | Os03g0686900 | FLO6 | Detail |
| C2H3g19404 | 3:25,109,095-25,114,669 | - | C1H3g04074 | CX3g025668 | LOC_Os03g51050 | Os03g0687000 | OsNPF2.4, NPF2.4, OsPTR2, PTR2 | Detail |
| C2H3g17935 | 3:25,127,611-25,131,595 | - | C1H3g27780 | CX3g029198 | LOC_Os03g48190 | Os03g0687200 | - | Detail |
| C2H3g12687 | 3:25,135,284-25,136,030 | - | C1H3g26805 | CX3g025750 | LOC_Os03g48200 | Os03g0687400 | - | Detail |
| C2H3g13078 | 3:25,137,917-25,138,663 | - | C1H3g31647 | CX3g029222 | LOC_Os03g48220 | Os03g0687700 | - | Detail |
| C2H3g02466 | 3:25,140,936-25,141,493 | - | C1H3g02479 | CX3g025750 | LOC_Os03g48225 | Os03g0687800 | - | Detail |
| C2H3g05793 | 3:25,142,535-25,143,269 | - | C1H3g12014 | CX3g028579 | LOC_Os03g48235 | Os03g0688000 | - | Detail |
| C2H3g06136 | 3:25,144,788-25,145,247 | - | C1H3g12256 | CX3g029222 | LOC_Os03g48220 | Os03g0687700 | - | Detail |
| C2H3g19874 | 3:25,146,922-25,151,844 | + | C1H3g24497 | CX3g029090 | LOC_Os03g48260 | Os03g0688200 | - | Detail |
| C2H3g05160 | 3:25,157,608-25,163,002 | + | C1H3g21570 | CX3g025253 | LOC_Os03g48270 | Os03g0688300 | CDPK9, OsCDPK9, OsCPK9 | Detail |
| C2H3g19979 | 3:25,186,796-25,214,847 | + | C1H3g15303 | CX3g027485 | LOC_Os03g48300 | Os03g0689100 | - | Detail |
| C2H3g24844 | 3:25,222,977-25,230,070 | + | C1H3g28879 | CX3g027452 | LOC_Os03g48310 | Os03g0689300 | - | Detail |
| C2H3g06110 | 3:25,231,632-25,235,399 | - | C1H3g09435 | CX3g026383 | LOC_Os03g48380 | Os03g0689900 | - | Detail |
| C2H3g14932 | 3:25,237,216-25,239,557 | + | C1H3g04287 | CX3g027552 | LOC_Os03g48390 | Os03g0690000 | - | Detail |
| C2H3g03020 | 3:25,282,883-25,286,063 | - | C1H3g28354 | CX3g028707 | LOC_Os03g48450 | Os03g0690600 | - | Detail |
| C2H3g18585 | 3:25,290,921-25,294,737 | + | C1H3g15398 | - | LOC_Os03g48471 | Os03g0690700 | - | Detail |
| C2H3g25812 | 3:25,324,182-25,326,537 | - | C1H3g11606 | CX3g027625 | LOC_Os03g48480 | Os03g0691400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |