| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g24723 | 9:4,947,146-4,947,657 | - | C2H9g26174 | CX9g057777 | LOC_Os09g10270 | Os09g0274800 | - | Detail |
| C1H9g26738 | 9:4,951,772-4,951,987 | - | - | - | - | - | - | Detail |
| C1H9g11872 | 9:5,014,138-5,014,836 | + | C2H9g16592 | CX9g056504 | LOC_Os09g10274 | Os09g0274900 | - | Detail |
| C1H9g02625 | 9:5,055,377-5,058,017 | + | C2H9g23535 | CX9g056236 | LOC_Os09g10330 | Os09g0275300 | - | Detail |
| C1H9g24102 | 9:5,068,365-5,071,476 | + | - | - | - | - | - | Detail |
| C1H9g11736 | 9:5,078,613-5,080,694 | - | C2H9g25792 | CX9g056135 | LOC_Os09g10340 | Os09g0275400 | - | Detail |
| C1H9g29336 | 9:5,092,238-5,093,916 | - | - | - | LOC_Os09g10360 | - | - | Detail |
| C1H9g30758 | 9:5,123,491-5,129,965 | - | - | - | - | - | - | Detail |
| C1H9g00786 | 9:5,161,042-5,165,113 | + | C2H9g28983 | CX9g055062 | LOC_Os09g10600 | Os09g0277800 | - | Detail |
| C1H9g21981 | 9:5,167,087-5,167,668 | + | C2H9g06132 | CX9g057594 | LOC_Os09g10620 | Os09g0278000 | - | Detail |
| C1H9g21232 | 9:5,176,109-5,176,710 | - | C2H9g09346 | CX9g056263 | - | Os09g0278300 | - | Detail |
| C1H9g17534 | 9:5,177,121-5,183,797 | - | C2H9g03725 | CX9g056263 | LOC_Os09g10650 | Os09g0278300 | - | Detail |
| C1H9g24436 | 9:5,220,684-5,226,555 | - | C2H9g27425 | CX9g055877 | LOC_Os09g10710 | Os09g0279000 | - | Detail |
| C1H9g25806 | 9:5,230,270-5,234,443 | - | C2H9g24351 | CX9g056801 | LOC_Os09g10720 | Os09g0279100 | - | Detail |
| C1H9g31209 | 9:5,246,752-5,247,986 | + | C2H9g04697 | CX9g056728 | LOC_Os09g10740 | Os09g0279300 | - | Detail |
| C1H9g00624 | 9:5,249,229-5,253,313 | + | C2H9g22785 | CX9g056856 | LOC_Os09g10750 | Os09g0279400 | - | Detail |
| C1H9g19154 | 9:5,253,808-5,255,985 | - | C2H9g28965 | CX9g056745 | LOC_Os09g10760 | Os09g0279500 | - | Detail |
| C1H9g13367 | 9:5,256,267-5,257,340 | - | C2H9g06839 | - | - | - | - | Detail |
| C1H9g10042 | 9:5,258,416-5,266,623 | + | C2H9g17273 | CX9g057832 | LOC_Os09g10770 | Os09g0279600 | TOP6B | Detail |
| C1H9g19087 | 9:5,271,191-5,275,620 | + | C2H9g14875 | CX9g056264 | LOC_Os09g10820 | Os09g0280300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g29368 | 4:30,507,658-30,513,591 | + | C1H4g17177 | CX4g034793 | LOC_Os04g59320 | Os04g0689400 | - | Detail |
| C2H4g10646 | 4:30,514,406-30,515,925 | + | C1H4g15962 | CX4g031663 | LOC_Os04g59330 | Os04g0689500 | - | Detail |
| C2H4g21499 | 4:30,520,045-30,521,017 | + | C1H4g05384 | CX4g036307 | LOC_Os04g59340 | Os04g0689700 | - | Detail |
| C2H4g01472 | 4:30,523,602-30,524,699 | + | C1H4g05536 | CX4g034950 | LOC_Os04g59360 | Os04g0689800 | - | Detail |
| C2H4g12610 | 4:30,526,563-30,530,889 | + | C1H4g14916 | CX4g032101 | LOC_Os04g59360 | Os04g0689800 | - | Detail |
| C2H4g18186 | 4:30,541,288-30,542,675 | + | C1H4g15741 | CX4g031741 | LOC_Os04g59370 | Os04g0689900 | - | Detail |
| C2H4g13638 | 4:30,551,643-30,554,062 | + | C1H4g21540 | CX4g034943 | LOC_Os04g59380 | Os04g0690100 | - | Detail |
| C2H4g23794 | 4:30,561,339-30,567,049 | + | C1H4g10285 | CX4g032712 | LOC_Os04g59394 | Os04g0690300 | - | Detail |
| C2H4g10236 | 4:30,568,757-30,572,207 | + | C1H4g14673 | CX4g035891 | LOC_Os04g59400 | Os04g0690400 | - | Detail |
| C2H4g10344 | 4:30,578,674-30,579,488 | + | C1H4g07117 | CX4g034143 | LOC_Os04g59420 | Os04g0690500 | - | Detail |
| C2H4g01830 | 4:30,580,591-30,584,096 | - | C1H4g16012 | CX4g032346 | LOC_Os04g59430 | Os04g0690600 | - | Detail |
| C2H4g21324 | 4:30,589,590-30,590,357 | + | - | - | LOC_Os04g59440 | Os04g0690800 | PSBS2, PsbS, OsPsbS2, PSII-S | Detail |
| C2H4g11677 | 4:30,594,897-30,596,851 | + | C1H4g05861 | CX4g034110 | LOC_Os04g59450 | Os04g0691100 | SAPK5, OsSAPK5 | Detail |
| C2H4g24101 | 4:30,597,364-30,606,211 | - | C1H4g07779 | CX4g036214 | LOC_Os04g59460 | Os04g0691200 | - | Detail |
| C2H4g14210 | 4:30,611,359-30,612,219 | - | C1H4g13585 | CX4g036345 | LOC_Os04g59470 | Os04g0691300 | - | Detail |
| C2H4g07706 | 4:30,613,775-30,616,115 | + | C1H4g12409 | CX4g035525 | LOC_Os04g59480 | Os04g0691400 | - | Detail |
| C2H4g03071 | 4:30,621,244-30,633,385 | + | C1H4g07625 | CX4g032924 | LOC_Os04g59494 | Os04g0691500 | - | Detail |
| C2H4g15610 | 4:30,633,797-30,634,228 | + | C1H4g01268 | - | - | Os04g0691600 | - | Detail |
| C2H4g09678 | 4:30,636,339-30,645,952 | - | C1H4g29823 | CX4g035435 | LOC_Os04g59510 | Os04g0691700 | - | Detail |
| C2H4g25533 | 4:30,645,582-30,645,842 | + | C1H4g24974 | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |