| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g24723 | 9:4,947,146-4,947,657 | - | C2H9g26174 | CX9g057777 | LOC_Os09g10270 | Os09g0274800 | - | Detail |
| C1H9g26738 | 9:4,951,772-4,951,987 | - | - | - | - | - | - | Detail |
| C1H9g11872 | 9:5,014,138-5,014,836 | + | C2H9g16592 | CX9g056504 | LOC_Os09g10274 | Os09g0274900 | - | Detail |
| C1H9g02625 | 9:5,055,377-5,058,017 | + | C2H9g23535 | CX9g056236 | LOC_Os09g10330 | Os09g0275300 | - | Detail |
| C1H9g24102 | 9:5,068,365-5,071,476 | + | - | - | - | - | - | Detail |
| C1H9g11736 | 9:5,078,613-5,080,694 | - | C2H9g25792 | CX9g056135 | LOC_Os09g10340 | Os09g0275400 | - | Detail |
| C1H9g29336 | 9:5,092,238-5,093,916 | - | - | - | LOC_Os09g10360 | - | - | Detail |
| C1H9g30758 | 9:5,123,491-5,129,965 | - | - | - | - | - | - | Detail |
| C1H9g00786 | 9:5,161,042-5,165,113 | + | C2H9g28983 | CX9g055062 | LOC_Os09g10600 | Os09g0277800 | - | Detail |
| C1H9g21981 | 9:5,167,087-5,167,668 | + | C2H9g06132 | CX9g057594 | LOC_Os09g10620 | Os09g0278000 | - | Detail |
| C1H9g21232 | 9:5,176,109-5,176,710 | - | C2H9g09346 | CX9g056263 | - | Os09g0278300 | - | Detail |
| C1H9g17534 | 9:5,177,121-5,183,797 | - | C2H9g03725 | CX9g056263 | LOC_Os09g10650 | Os09g0278300 | - | Detail |
| C1H9g24436 | 9:5,220,684-5,226,555 | - | C2H9g27425 | CX9g055877 | LOC_Os09g10710 | Os09g0279000 | - | Detail |
| C1H9g25806 | 9:5,230,270-5,234,443 | - | C2H9g24351 | CX9g056801 | LOC_Os09g10720 | Os09g0279100 | - | Detail |
| C1H9g31209 | 9:5,246,752-5,247,986 | + | C2H9g04697 | CX9g056728 | LOC_Os09g10740 | Os09g0279300 | - | Detail |
| C1H9g00624 | 9:5,249,229-5,253,313 | + | C2H9g22785 | CX9g056856 | LOC_Os09g10750 | Os09g0279400 | - | Detail |
| C1H9g19154 | 9:5,253,808-5,255,985 | - | C2H9g28965 | CX9g056745 | LOC_Os09g10760 | Os09g0279500 | - | Detail |
| C1H9g13367 | 9:5,256,267-5,257,340 | - | C2H9g06839 | - | - | - | - | Detail |
| C1H9g10042 | 9:5,258,416-5,266,623 | + | C2H9g17273 | CX9g057832 | LOC_Os09g10770 | Os09g0279600 | TOP6B | Detail |
| C1H9g19087 | 9:5,271,191-5,275,620 | + | C2H9g14875 | CX9g056264 | LOC_Os09g10820 | Os09g0280300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g03322 | 3:27,340,934-27,343,315 | - | C1H3g30625 | CX3g030181 | LOC_Os03g51950 | Os03g0729200 | - | Detail |
| C2H3g24100 | 3:27,345,488-27,347,402 | - | C1H3g13523 | CX3g029650 | LOC_Os03g51960 | Os03g0729300 | - | Detail |
| C2H3g29250 | 3:27,369,741-27,373,697 | + | C1H3g25309 | CX3g026395 | LOC_Os03g51970 | Os03g0729500 | GRF6, OsGRF6 | Detail |
| C2H3g12464 | 3:27,375,331-27,376,252 | - | C1H3g03104 | - | - | - | - | Detail |
| C2H3g18708 | 3:27,376,638-27,379,340 | + | C1H3g10749 | CX3g025921 | LOC_Os03g51984 | Os03g0729700 | - | Detail |
| C2H3g00085 | 3:27,384,328-27,384,774 | + | C1H3g20671 | CX3g030041 | LOC_Os03g51990 | Os03g0729800 | - | Detail |
| C2H3g30065 | 3:27,384,854-27,386,330 | + | C1H3g23285 | CX3g030041 | LOC_Os03g51990 | Os03g0729800 | - | Detail |
| C2H3g12843 | 3:27,386,439-27,391,421 | - | C1H3g08051 | CX3g029030 | LOC_Os03g52000 | Os03g0729900 | - | Detail |
| C2H3g06578 | 3:27,394,137-27,395,989 | - | C1H3g02659 | CX3g026263 | LOC_Os03g52010 | Os03g0730000 | - | Detail |
| C2H3g03305 | 3:27,404,886-27,410,696 | + | C1H3g27135 | CX3g025486 | LOC_Os03g52040 | Os03g0730400 | - | Detail |
| C2H3g11768 | 3:27,417,648-27,422,103 | + | C1H3g19587 | CX3g025486 | LOC_Os03g52070 | Os03g0730500 | - | Detail |
| C2H3g24985 | 3:27,427,449-27,433,104 | + | C1H3g15717 | CX3g025486 | LOC_Os03g52080 | Os03g0730700 | - | Detail |
| C2H3g15444 | 3:27,435,408-27,458,540 | - | C1H3g25117 | CX3g030109 | LOC_Os03g52090 | Os03g0730800 | - | Detail |
| C2H3g30622 | 3:27,461,075-27,464,152 | + | C1H3g02569 | CX3g024994 | LOC_Os03g52120 | Os03g0731050 | - | Detail |
| C2H3g14888 | 3:27,464,946-27,465,970 | + | C1H3g13296 | CX3g027975 | LOC_Os03g52130 | Os03g0731100 | - | Detail |
| C2H3g15813 | 3:27,470,789-27,480,513 | + | C1H3g30965 | CX3g026280 | LOC_Os03g52150 | Os03g0731500 | - | Detail |
| C2H3g18334 | 3:27,480,972-27,482,527 | + | C1H3g29781 | CX3g025632 | LOC_Os03g52160 | Os03g0731800 | - | Detail |
| C2H3g17469 | 3:27,482,637-27,485,949 | - | C1H3g24484 | CX3g027993 | LOC_Os03g52170 | Os03g0731900 | OsHMBPP, LAS1, LAS1/OsHMBPP | Detail |
| C2H3g17794 | 3:27,489,179-27,493,171 | - | C1H3g05748 | CX3g028410 | LOC_Os03g52180 | Os03g0732000 | OsIspH2 | Detail |
| C2H3g20028 | 3:27,520,491-27,530,041 | + | C1H3g07434 | CX3g027773 | LOC_Os03g52239 | Os03g0732100 | ROSES1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |