| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g26801 | 9:4,076,644-4,077,870 | - | C2H9g03970 | CX9g057750 | LOC_Os03g31134 | Os03g0424800 | - | Detail |
| C1H9g07929 | 9:4,081,870-4,085,677 | - | C2H9g04994 | CX9g054915 | LOC_Os09g08430 | Os09g0258600 | - | Detail |
| C1H9g13981 | 9:4,101,625-4,102,422 | + | C2H9g09636 | CX9g056739 | LOC_Os09g08270 | Os09g0256600 | - | Detail |
| C1H9g01470 | 9:4,106,683-4,107,084 | + | C2H9g09579 | CX9g056409 | LOC_Os09g08280 | Os09g0256700 | - | Detail |
| C1H9g25599 | 9:4,120,022-4,120,819 | + | C2H9g20708 | CX9g057129 | LOC_Os09g08270 | Os09g0256600 | - | Detail |
| C1H9g05698 | 9:4,167,112-4,168,218 | + | C2H9g04777 | CX9g054865 | LOC_Os09g08570 | Os09g0260200 | - | Detail |
| C1H9g21104 | 9:4,174,579-4,175,677 | + | C2H9g21698 | CX9g054865 | LOC_Os09g08580 | Os09g0259500 | - | Detail |
| C1H9g30517 | 9:4,216,211-4,224,611 | - | C2H9g15136 | CX9g056387 | LOC_Os09g08660 | Os09g0261300 | - | Detail |
| C1H9g04788 | 9:4,235,661-4,249,806 | + | - | CX9g055912 | LOC_Os09g08670 | Os09g0261400 | - | Detail |
| C1H9g27282 | 9:4,271,873-4,275,003 | + | C2H9g00830 | CX9g055157 | LOC_Os09g08720 | Os09g0262000 | - | Detail |
| C1H9g31888 | 9:4,291,542-4,300,699 | - | C2H9g28588 | CX9g056081 | LOC_Os09g08730 | Os09g0497100 | - | Detail |
| C1H9g04333 | 9:4,316,116-4,319,317 | - | C2H9g30360 | CX9g055944 | LOC_Os09g08920 | Os09g0263933 | OsF3'H5 | Detail |
| C1H9g30168 | 9:4,343,939-4,346,546 | - | C2H9g20438 | CX9g056167 | LOC_Os09g08990 | Os09g0264400 | - | Detail |
| C1H9g15533 | 9:4,396,050-4,396,703 | + | C2H9g20232 | CX9g055239 | LOC_Os09g09220 | Os09g0351800 | - | Detail |
| C1H9g30452 | 9:4,398,223-4,404,342 | + | C2H9g15664 | CX9g057929 | LOC_Os09g09220 | Os09g0353200 | - | Detail |
| C1H9g00023 | 9:4,406,076-4,415,340 | - | C2H9g15012 | CX9g056560 | LOC_Os09g08720 | Os09g0262000 | - | Detail |
| C1H9g17395 | 9:4,408,235-4,408,483 | + | - | - | - | - | - | Detail |
| C1H9g11406 | 9:4,441,043-4,442,434 | + | C2H9g14834 | CX9g058195 | LOC_Os09g09320 | Os09g0266000 | - | Detail |
| C1H9g26799 | 9:4,452,324-4,454,677 | - | C2H9g28356 | CX9g056448 | - | Os09g0246700 | - | Detail |
| C1H9g22089 | 9:4,460,093-4,461,678 | - | C2H9g22212 | CX9g056448 | - | Os09g0266100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g18428 | 3:10,113,603-10,119,053 | + | C1H3g25351 | CX3g028132 | LOC_Os03g20180 | Os03g0317000 | - | Detail |
| C2H3g29051 | 3:10,120,425-10,123,556 | + | C1H3g17147 | CX3g030095 | LOC_Os03g20190 | Os03g0317100 | - | Detail |
| C2H3g17176 | 3:10,127,690-10,129,036 | + | C1H3g11404 | CX3g028796 | LOC_Os03g20210 | Os03g0317300 | - | Detail |
| C2H3g05954 | 3:10,129,665-10,130,966 | + | C1H3g16001 | CX3g026260 | LOC_Os03g20230 | Os03g0318400 | - | Detail |
| C2H3g08312 | 3:10,148,285-10,149,496 | + | C1H3g07890 | CX3g025491 | LOC_Os03g20230 | Os03g0317900 | - | Detail |
| C2H3g29183 | 3:10,156,535-10,157,829 | + | C1H3g20479 | CX3g028957 | LOC_Os03g20290 | Os03g0318400 | - | Detail |
| C2H3g10315 | 3:10,159,326-10,165,265 | - | C1H3g31254 | CX3g024974 | LOC_Os03g20300 | Os03g0318500 | - | Detail |
| C2H3g15586 | 3:10,165,700-10,170,792 | - | C1H3g27797 | CX3g025701 | LOC_Os03g20310 | Os03g0318600 | OsTGA3 | Detail |
| C2H3g06773 | 3:10,189,059-10,189,592 | + | C1H3g25597 | CX3g031095 | LOC_Os03g20330 | Os03g0319000 | - | Detail |
| C2H3g23539 | 3:10,198,181-10,202,944 | + | C1H3g29099 | CX3g030494 | LOC_Os03g20340 | Os03g0319100 | - | Detail |
| C2H3g28901 | 3:10,210,141-10,211,572 | + | C1H3g19829 | CX3g028434 | LOC_Os03g20350 | Os03g0319200 | - | Detail |
| C2H3g27412 | 3:10,215,103-10,216,385 | + | C1H3g23043 | CX3g031077 | LOC_Os03g20370 | Os03g0319300 | OsCam1-1, OsCaM1-1, OsCaM1 | Detail |
| C2H3g25279 | 3:10,218,816-10,224,305 | - | C1H3g21490 | CX3g026317 | LOC_Os03g20380 | Os03g0319400 | - | Detail |
| C2H3g09371 | 3:10,236,975-10,240,513 | - | C1H3g25971 | CX3g025212 | LOC_Os03g20410 | Os03g0320000 | OsSIP2 | Detail |
| C2H3g22340 | 3:10,246,385-10,254,520 | - | C1H3g08252 | CX3g029293 | LOC_Os03g20420 | Os03g0320100 | - | Detail |
| C2H3g01972 | 3:10,258,993-10,260,337 | + | C1H3g09342 | CX3g029244 | LOC_Os03g20430 | Os03g0320400 | - | Detail |
| C2H3g13875 | 3:10,265,951-10,266,607 | - | C1H3g07396 | CX3g027813 | LOC_Os03g20440 | Os03g0320600 | - | Detail |
| C2H3g23140 | 3:10,282,338-10,287,474 | + | C1H3g21035 | CX3g030303 | LOC_Os03g20450 | Os03g0320800 | - | Detail |
| C2H3g14660 | 3:10,290,528-10,293,295 | + | C1H3g22135 | CX3g027683 | LOC_Os03g20460 | Os03g0320900 | V2, pt/mtGK | Detail |
| C2H3g12919 | 3:10,294,659-10,297,133 | + | C1H3g27273 | CX3g026494 | LOC_Os03g20470 | Os03g0321000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |