| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g00213 | 9:3,599,614-3,612,477 | - | C2H9g30619 | CX9g056929 | LOC_Os09g07670 | Os09g0250800 | - | Detail |
| C1H9g12000 | 9:3,632,374-3,634,012 | + | C2H9g15415 | - | LOC_Os09g07780 | Os09g0251450 | - | Detail |
| C1H9g31511 | 9:3,653,452-3,655,410 | + | C2H9g06665 | CX9g057361 | LOC_Os09g07730 | Os09g0251100 | - | Detail |
| C1H9g27075 | 9:3,657,872-3,658,318 | + | C2H9g25970 | - | LOC_Os01g46910 | Os01g0658300 | - | Detail |
| C1H9g20803 | 9:3,665,646-3,668,545 | + | C2H9g10088 | CX9g056095 | LOC_Os09g07800 | Os09g0251800 | - | Detail |
| C1H9g11596 | 9:3,675,254-3,678,338 | + | C2H9g03841 | CX9g056028 | LOC_Os09g07820 | Os09g0252000 | - | Detail |
| C1H9g25197 | 9:3,692,890-3,698,372 | + | C2H9g18120 | CX9g057349 | LOC_Os09g07830 | Os09g0252100 | - | Detail |
| C1H9g01757 | 9:3,706,969-3,709,235 | + | C2H9g17789 | CX9g056942 | - | - | - | Detail |
| C1H9g01122 | 9:3,720,934-3,740,322 | + | C2H9g02510 | CX9g056025 | LOC_Os09g07900 | Os09g0252800 | - | Detail |
| C1H9g06245 | 9:3,746,472-3,748,905 | + | C2H9g27366 | - | LOC_Os09g07920 | Os09g0253000 | - | Detail |
| C1H9g08288 | 9:3,764,759-3,767,606 | - | C2H9g19417 | CX9g057312 | LOC_Os09g07990 | Os09g0535200 | - | Detail |
| C1H9g10685 | 9:3,786,315-3,788,841 | - | C2H9g25594 | CX9g057312 | LOC_Os09g07940 | Os09g0535200 | - | Detail |
| C1H9g14679 | 9:3,808,254-3,813,732 | + | C2H9g07409 | CX9g057173 | LOC_Os09g08072 | Os09g0255000 | - | Detail |
| C1H9g08895 | 9:3,824,013-3,824,783 | + | C2H9g01652 | CX9g057173 | LOC_Os09g08072 | Os09g0255300 | - | Detail |
| C1H9g16230 | 9:3,844,366-3,847,474 | - | C2H9g05685 | CX9g056657 | LOC_Os09g08130 | Os09g0255400 | - | Detail |
| C1H9g01132 | 9:3,878,015-3,880,761 | + | C2H9g04238 | - | - | - | - | Detail |
| C1H9g30569 | 9:3,887,914-3,891,030 | - | - | CX9g056239 | - | - | - | Detail |
| C1H9g08547 | 9:4,024,352-4,029,923 | - | C2H9g08292 | CX9g055604 | LOC_Os09g08390 | Os09g0258000 | - | Detail |
| C1H9g28379 | 9:4,067,274-4,070,862 | - | C2H9g11852 | CX9g055819 | LOC_Os09g08420 | Os09g0258500 | OsAGC16 | Detail |
| C1H9g08162 | 9:4,073,477-4,074,180 | - | C2H9g03970 | CX9g057750 | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g16716 | 4:29,196,574-29,202,704 | + | C1H4g13098 | CX4g034339 | LOC_Os04g56720 | Os04g0662800 | - | Detail |
| C2H4g14267 | 4:29,203,420-29,205,381 | - | C1H4g29894 | CX4g033445 | LOC_Os04g56730 | Os04g0662900 | - | Detail |
| C2H4g26679 | 4:29,222,202-29,228,139 | + | C1H4g08308 | CX4g032535 | LOC_Os04g56740 | Os04g0663100 | - | Detail |
| C2H4g19453 | 4:29,231,603-29,237,104 | - | C1H4g00285 | CX4g033028 | LOC_Os04g56750 | Os04g0663200 | - | Detail |
| C2H4g17808 | 4:29,238,059-29,238,391 | - | C1H5g05278 | CX4g031937 | LOC_Os04g56760 | Os04g0663300 | OsPHF5A1 | Detail |
| C2H4g23478 | 4:29,239,673-29,239,927 | + | C1H4g10605 | CX4g034501 | - | - | - | Detail |
| C2H4g29870 | 4:29,239,978-29,243,354 | + | C1H4g18316 | CX4g032009 | LOC_Os04g56770 | Os04g0663500 | - | Detail |
| C2H4g27682 | 4:29,244,197-29,245,269 | - | C1H4g08413 | CX4g035961 | LOC_Os04g56780 | Os04g0663600 | WOX1, Os WUS, WUS, OsWOX1, OsWUS, TAB1, TAB1/WUS, MOC3, MOC3/OsWUS | Detail |
| C2H4g25028 | 4:29,253,233-29,260,212 | - | C1H4g06808 | CX4g034853 | LOC_Os04g56790 | Os04g0663700 | - | Detail |
| C2H4g24912 | 4:29,262,184-29,262,843 | + | - | CX4g036037 | LOC_Os04g56820 | - | - | Detail |
| C2H4g18884 | 4:29,265,411-29,265,767 | + | - | CX4g035877 | - | - | - | Detail |
| C2H4g26604 | 4:29,266,394-29,267,548 | - | - | - | - | - | - | Detail |
| C2H4g20102 | 4:29,268,657-29,274,641 | - | C1H4g18422 | CX4g033249 | LOC_Os04g56850 | Os04g0664400 | OsARF11, OsMP | Detail |
| C2H4g00899 | 4:29,296,008-29,297,348 | + | C1H4g27904 | CX4g034957 | LOC_Os04g56900 | Os04g0664500 | OsAHT1 | Detail |
| C2H4g19479 | 4:29,299,350-29,300,699 | - | C1H4g27904 | CX4g035701 | LOC_Os04g56910 | Os04g0664600 | OsAHT2 | Detail |
| C2H4g29529 | 4:29,307,857-29,308,045 | - | C1H4g28826 | CX4g036377 | LOC_Os04g56920 | Os04g0664800 | - | Detail |
| C2H4g12473 | 4:29,308,394-29,310,189 | - | C1H4g28826 | CX4g036377 | LOC_Os04g56920 | Os04g0664800 | - | Detail |
| C2H4g26922 | 4:29,310,977-29,313,340 | - | C1H4g05011 | CX4g036377 | LOC_Os04g56930 | Os04g0664900 | - | Detail |
| C2H4g09681 | 4:29,314,042-29,316,157 | + | C1H4g08334 | CX4g034395 | - | Os04g0665000 | - | Detail |
| C2H4g19734 | 4:29,317,030-29,318,991 | - | C1H4g02808 | CX4g035345 | LOC_Os04g56950 | Os04g0665200 | IAMT1, OsIAMT1, OsSABATH4 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |