| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g00213 | 9:3,599,614-3,612,477 | - | C2H9g30619 | CX9g056929 | LOC_Os09g07670 | Os09g0250800 | - | Detail |
| C1H9g12000 | 9:3,632,374-3,634,012 | + | C2H9g15415 | - | LOC_Os09g07780 | Os09g0251450 | - | Detail |
| C1H9g31511 | 9:3,653,452-3,655,410 | + | C2H9g06665 | CX9g057361 | LOC_Os09g07730 | Os09g0251100 | - | Detail |
| C1H9g27075 | 9:3,657,872-3,658,318 | + | C2H9g25970 | - | LOC_Os01g46910 | Os01g0658300 | - | Detail |
| C1H9g20803 | 9:3,665,646-3,668,545 | + | C2H9g10088 | CX9g056095 | LOC_Os09g07800 | Os09g0251800 | - | Detail |
| C1H9g11596 | 9:3,675,254-3,678,338 | + | C2H9g03841 | CX9g056028 | LOC_Os09g07820 | Os09g0252000 | - | Detail |
| C1H9g25197 | 9:3,692,890-3,698,372 | + | C2H9g18120 | CX9g057349 | LOC_Os09g07830 | Os09g0252100 | - | Detail |
| C1H9g01757 | 9:3,706,969-3,709,235 | + | C2H9g17789 | CX9g056942 | - | - | - | Detail |
| C1H9g01122 | 9:3,720,934-3,740,322 | + | C2H9g02510 | CX9g056025 | LOC_Os09g07900 | Os09g0252800 | - | Detail |
| C1H9g06245 | 9:3,746,472-3,748,905 | + | C2H9g27366 | - | LOC_Os09g07920 | Os09g0253000 | - | Detail |
| C1H9g08288 | 9:3,764,759-3,767,606 | - | C2H9g19417 | CX9g057312 | LOC_Os09g07990 | Os09g0535200 | - | Detail |
| C1H9g10685 | 9:3,786,315-3,788,841 | - | C2H9g25594 | CX9g057312 | LOC_Os09g07940 | Os09g0535200 | - | Detail |
| C1H9g14679 | 9:3,808,254-3,813,732 | + | C2H9g07409 | CX9g057173 | LOC_Os09g08072 | Os09g0255000 | - | Detail |
| C1H9g08895 | 9:3,824,013-3,824,783 | + | C2H9g01652 | CX9g057173 | LOC_Os09g08072 | Os09g0255300 | - | Detail |
| C1H9g16230 | 9:3,844,366-3,847,474 | - | C2H9g05685 | CX9g056657 | LOC_Os09g08130 | Os09g0255400 | - | Detail |
| C1H9g01132 | 9:3,878,015-3,880,761 | + | C2H9g04238 | - | - | - | - | Detail |
| C1H9g30569 | 9:3,887,914-3,891,030 | - | - | CX9g056239 | - | - | - | Detail |
| C1H9g08547 | 9:4,024,352-4,029,923 | - | C2H9g08292 | CX9g055604 | LOC_Os09g08390 | Os09g0258000 | - | Detail |
| C1H9g28379 | 9:4,067,274-4,070,862 | - | C2H9g11852 | CX9g055819 | LOC_Os09g08420 | Os09g0258500 | OsAGC16 | Detail |
| C1H9g08162 | 9:4,073,477-4,074,180 | - | C2H9g03970 | CX9g057750 | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g29726 | 9:17,780,620-17,783,032 | - | C1H9g18045 | CX9g058091 | LOC_Os09g36360 | Os09g0534000 | - | Detail |
| C2H9g06995 | 9:17,786,587-17,790,379 | + | C1H9g14355 | CX9g055858 | LOC_Os09g36370 | Os09g0534200 | - | Detail |
| C2H9g24532 | 9:17,795,110-17,797,840 | + | C1H9g04179 | CX9g058141 | LOC_Os09g36440 | Os09g0534800 | - | Detail |
| C2H9g26686 | 9:17,799,433-17,802,786 | - | C1H9g22452 | CX9g055137 | LOC_Os09g36450 | Os09g0535000 | - | Detail |
| C2H9g12415 | 9:17,803,763-17,806,894 | + | C1H9g27668 | CX9g057768 | LOC_Os09g36460 | Os09g0535100 | - | Detail |
| C2H9g19017 | 9:17,811,989-17,814,876 | + | C1H9g23309 | CX9g056220 | LOC_Os09g36470 | Os09g0535200 | - | Detail |
| C2H9g02266 | 9:17,815,861-17,818,770 | + | C1H9g30113 | CX9g056638 | LOC_Os09g36480 | Os09g0535300 | - | Detail |
| C2H9g18632 | 9:17,826,392-17,827,405 | - | C1H9g02156 | CX9g055022 | LOC_Os09g36520 | Os09g0535900 | - | Detail |
| C2H9g08077 | 9:17,833,313-17,837,352 | - | C1H9g18132 | CX9g057534 | LOC_Os09g36530 | Os09g0536000 | - | Detail |
| C2H9g01597 | 9:17,848,085-17,849,838 | + | C1H9g23828 | CX9g055542 | LOC_Os09g36560 | Os09g0536300 | - | Detail |
| C2H9g27916 | 9:17,861,065-17,863,339 | + | C1H9g17095 | CX9g056300 | LOC_Os09g36580 | Os09g0536400 | - | Detail |
| C2H9g02676 | 9:17,869,987-17,873,375 | - | C1H9g11028 | CX9g057416 | LOC_Os09g36600 | Os09g0536700 | - | Detail |
| C2H9g02330 | 9:17,884,473-17,887,022 | + | C1H9g06888 | CX9g057733 | LOC_Os09g36670 | Os09g0537600 | - | Detail |
| C2H9g11788 | 9:17,888,726-17,891,134 | - | C1H9g14336 | CX9g057345 | LOC_Os09g36680 | Os09g0537700 | RNS4, OsRNS4, OsRRP, RNaseDIS | Detail |
| C2H9g24881 | 9:17,896,514-17,898,965 | - | C1H9g12593 | CX9g055095 | LOC_Os09g36700 | Os09g0538000 | - | Detail |
| C2H9g25356 | 9:17,901,374-17,903,543 | + | C1H9g12194 | CX9g057133 | LOC_Os09g36710 | Os09g0538200 | - | Detail |
| C2H9g08114 | 9:17,918,713-17,919,889 | - | C1H9g31173 | CX9g055420 | LOC_Os09g36730 | Os09g0538400 | OsMYB108 | Detail |
| C2H9g01669 | 9:17,926,216-17,926,659 | - | C1H9g22212 | CX9g056101 | LOC_Os09g36735 | Os09g0538450 | - | Detail |
| C2H9g03742 | 9:17,927,008-17,928,875 | + | C1H9g15664 | CX9g057786 | LOC_Os09g36740 | Os09g0538500 | MS5 | Detail |
| C2H9g08362 | 9:17,929,360-17,933,409 | - | C1H9g23441 | CX9g056628 | LOC_Os09g36750 | Os09g0538600 | APX9 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |