| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g29952 | 9:1,560,638-1,569,812 | - | C2H9g28698 | CX9g056246 | LOC_Os09g03630 | Os09g0123500 | - | Detail |
| C1H9g11160 | 9:1,601,924-1,602,677 | + | - | - | - | - | - | Detail |
| C1H9g16072 | 9:1,609,746-1,619,299 | - | C2H9g19292 | CX9g057791 | LOC_Os09g03680 | Os09g0123500 | - | Detail |
| C1H9g23209 | 9:1,639,004-1,641,384 | - | C2H9g25534 | - | - | - | - | Detail |
| C1H9g12801 | 9:1,644,830-1,654,246 | + | C2H9g16378 | CX9g056574 | LOC_Os09g03750 | Os09g0124800 | - | Detail |
| C1H9g18385 | 9:1,663,335-1,663,976 | - | C2H9g09163 | CX9g057875 | LOC_Os09g03780 | Os02g0135850 | - | Detail |
| C1H9g04346 | 9:1,678,786-1,679,421 | - | C2H9g12670 | CX9g057169 | LOC_Os09g03810 | Os09g0125400 | - | Detail |
| C1H9g26448 | 9:1,708,397-1,711,894 | + | C2H9g17647 | CX9g055235 | LOC_Os09g03890 | Os09g0125828 | TAPE | Detail |
| C1H9g19601 | 9:1,733,789-1,746,990 | - | C2H9g28868 | CX9g056929 | LOC_Os09g03939 | Os09g0125900 | - | Detail |
| C1H9g08317 | 9:1,779,773-1,780,293 | - | - | - | - | Os09g0124566 | - | Detail |
| C1H9g10816 | 9:1,792,479-1,802,864 | + | C2H9g26990 | CX9g056311 | LOC_Os09g03990 | Os09g0126600 | - | Detail |
| C1H9g21729 | 9:1,796,006-1,798,128 | - | - | - | - | - | - | Detail |
| C1H9g15887 | 9:1,820,599-1,823,719 | - | C2H9g25521 | CX9g054979 | LOC_Os09g04050 | Os09g0127300 | OsCCR17 | Detail |
| C1H9g16571 | 9:1,883,628-1,889,716 | - | C2H9g09431 | CX9g056004 | LOC_Os09g04110 | Os09g0127800 | - | Detail |
| C1H9g16037 | 9:1,908,367-1,914,309 | - | C2H9g00209 | CX9g057437 | LOC_Os09g04160 | Os09g0128400 | - | Detail |
| C1H9g17987 | 9:1,924,214-1,933,437 | - | C2H9g03904 | CX9g055087 | LOC_Os09g04210 | Os09g0128600 | - | Detail |
| C1H9g24985 | 9:1,935,655-1,935,851 | - | C2H9g03904 | CX9g055087 | LOC_Os09g04210 | - | - | Detail |
| C1H9g09088 | 9:1,994,985-1,997,085 | + | C2H9g27183 | CX9g054970 | LOC_Os09g04430 | Os09g0130700 | - | Detail |
| C1H9g28757 | 9:1,998,197-2,004,783 | - | - | - | - | - | - | Detail |
| C1H9g01770 | 9:2,004,847-2,005,126 | - | - | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g16452 | 3:33,046,539-33,047,911 | - | C1H3g04119 | CX3g031284 | LOC_Os03g64340 | Os03g0861400 | - | Detail |
| C2H3g12472 | 3:33,054,436-33,059,715 | - | C1H3g17429 | CX3g030656 | LOC_Os03g64350 | Os03g0861700 | - | Detail |
| C2H3g08959 | 3:33,059,879-33,062,631 | + | C1H3g24824 | CX3g028909 | LOC_Os03g64360 | Os03g0861800 | - | Detail |
| C2H3g16629 | 3:33,072,868-33,079,793 | + | C1H3g08341 | CX3g029193 | LOC_Os03g64400 | Os03g0862100 | - | Detail |
| C2H3g28738 | 3:33,082,826-33,084,731 | - | - | CX3g027325 | LOC_Os03g64415 | - | - | Detail |
| C2H4g04859 | 4:3,816-6,198 | + | C1H6g20714 | CX6g041752 | LOC_Os06g01840 | Os06g0107600 | - | Detail |
| C2H4g12961 | 4:6,554-8,915 | - | C1H6g26100 | CX6g042457 | LOC_Os06g01850 | Os06g0107700 | OsLFNR2, LFNR2, FNR | Detail |
| C2H4g04026 | 4:11,903-12,487 | - | - | CX6g041557 | LOC_Os06g01860 | Os06g0107800 | BPH29 | Detail |
| C2H4g21175 | 4:18,091-18,357 | + | C1H6g12285 | CX6g042594 | LOC_Os06g01890 | Os06g0108500 | - | Detail |
| C2H4g10486 | 4:20,285-22,820 | + | C1H6g01350 | CX6g042594 | LOC_Os06g01890 | Os06g0108500 | - | Detail |
| C2H4g22338 | 4:23,536-24,372 | - | - | CX6g042160 | LOC_Os06g01920 | Os06g0108600 | - | Detail |
| C2H4g13792 | 4:35,633-38,645 | + | C1H6g04390 | CX6g043309 | LOC_Os06g01934 | - | - | Detail |
| C2H4g26823 | 4:39,446-40,543 | - | - | CX6g041477 | LOC_Os06g01950 | Os06g0109000 | - | Detail |
| C2H4g18764 | 4:42,224-42,691 | - | - | CX6g041174 | LOC_Os06g01960 | Os06g0109100 | - | Detail |
| C2H4g20581 | 4:50,539-52,867 | - | C1H4g20758 | - | - | - | - | Detail |
| C2H4g20979 | 4:57,481-57,976 | - | C1H4g13734 | CX4g036368 | - | - | - | Detail |
| C2H4g12191 | 4:104,764-106,551 | - | C1H4g16035 | - | - | - | - | Detail |
| C2H4g13233 | 4:105,552-108,242 | + | C1H4g00861 | CX4g032894 | LOC_Os04g01070 | Os04g0100300 | - | Detail |
| C2H4g05647 | 4:152,099-161,042 | + | C1H4g00970 | CX4g034809 | LOC_Os04g01130 | Os04g0101300 | - | Detail |
| C2H4g16448 | 4:162,988-164,816 | - | C1H4g04170 | CX4g034027 | LOC_Os04g01140 | Os04g0101400 | CYP93G1, OsCYP93G1, OsFNSII, FNSII | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |