| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g28114 | 9:127,927-128,471 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g14009 | 9:138,087-138,631 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g27378 | 9:148,248-148,792 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g01621 | 9:158,408-158,952 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g09939 | 9:168,569-169,113 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g10841 | 9:222,155-222,469 | + | - | - | - | - | - | Detail |
| C1H9g20378 | 9:225,139-229,991 | - | C2H9g07486 | CX9g055204 | LOC_Os09g01140 | Os09g0100800 | OsGeBP11 | Detail |
| C1H9g29200 | 9:259,419-263,710 | - | C2H9g02141 | CX9g056163 | LOC_Os09g01290 | Os09g0101100 | - | Detail |
| C1H9g04128 | 9:301,326-311,063 | - | C2H9g15899 | CX9g055897 | LOC_Os09g01360 | Os09g0101800 | - | Detail |
| C1H9g17462 | 9:311,725-312,382 | - | C2H9g15899 | CX9g055897 | LOC_Os09g01360 | Os09g0101800 | - | Detail |
| C1H9g17478 | 9:331,713-332,598 | - | - | - | - | - | - | Detail |
| C1H9g27523 | 9:368,464-377,135 | + | C2H9g24411 | CX9g057870 | LOC_Os09g01590 | Os09g0103100 | - | Detail |
| C1H9g01741 | 9:380,162-385,109 | + | C2H9g22972 | CX9g057297 | LOC_Os09g01600 | Os09g0103200 | - | Detail |
| C1H9g12264 | 9:397,300-402,931 | + | C2H9g07969 | CX9g055170 | LOC_Os09g01620 | Os09g0103500 | - | Detail |
| C1H9g24389 | 9:405,379-412,173 | - | C2H9g23774 | CX9g055607 | LOC_Os09g01630 | Os09g0103600 | - | Detail |
| C1H9g06955 | 9:441,136-447,435 | + | C2H9g22729 | CX9g055907 | LOC_Os09g01650 | Os09g0103800 | - | Detail |
| C1H9g22354 | 9:471,216-474,715 | - | C2H9g16634 | CX9g057376 | LOC_Os09g01680 | Os09g0104200 | RAD51D, OsRAD51D.3, OsRAD51D, OsRad51D | Detail |
| C1H9g21586 | 9:474,785-477,542 | + | C2H9g14701 | - | LOC_Os09g01690 | Os09g0104300 | - | Detail |
| C1H9g13033 | 9:512,612-515,182 | - | C2H9g17453 | CX9g054917 | LOC_Os09g01790 | - | - | Detail |
| C1H9g05252 | 9:558,682-560,315 | + | C2H9g11873 | CX9g056345 | LOC_Os07g15420 | Os09g0499600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g16755 | 5:18,287,166-18,288,263 | + | - | - | LOC_Os01g64020 | Os01g0859500 | OsLG2, rLG2 | Detail |
| C2H5g21089 | 5:18,288,699-18,294,268 | + | C1H5g18939 | CX5g040832 | LOC_Os05g37170 | Os05g0443900 | OsLG2L | Detail |
| C2H5g30678 | 5:18,303,051-18,304,847 | + | C1H5g18403 | CX5g041157 | LOC_Os05g37190 | Os05g0444200 | - | Detail |
| C2H5g05442 | 5:18,316,352-18,319,231 | + | C1H5g26308 | CX5g039100 | LOC_Os05g37200 | Os05g0444300 | - | Detail |
| C2H5g26088 | 5:18,322,017-18,322,445 | + | - | - | - | - | - | Detail |
| C2H5g05266 | 5:18,324,473-18,328,483 | + | C1H5g17523 | CX5g039100 | LOC_Os05g37210 | Os05g0444500 | - | Detail |
| C2H5g02726 | 5:18,329,896-18,330,327 | - | C1H5g21085 | - | - | - | - | Detail |
| C2H5g19880 | 5:18,349,363-18,350,922 | + | C1H5g15251 | CX5g037707 | LOC_Os05g37250 | Os05g0445100 | - | Detail |
| C2H5g22436 | 5:18,362,467-18,364,605 | + | C1H5g10165 | CX5g036986 | LOC_Os05g37330 | Os05g0445500 | - | Detail |
| C2H5g19823 | 5:18,366,471-18,369,397 | + | C1H5g16582 | CX5g039380 | LOC_Os05g37340 | Os05g0445800 | - | Detail |
| C2H5g27548 | 5:18,370,558-18,381,564 | - | C1H5g23261 | CX5g037841 | LOC_Os05g37410 | Os05g0446600 | DNG704 | Detail |
| C2H5g29688 | 5:18,385,929-18,394,026 | - | C1H5g23416 | CX5g040916 | LOC_Os05g37434 | Os05g0446800 | - | Detail |
| C2H5g22596 | 5:18,397,594-18,399,967 | - | C1H5g20294 | CX5g040141 | LOC_Os05g37450 | Os05g0446900 | SBDCP2 | Detail |
| C2H5g12625 | 5:18,402,810-18,404,198 | - | C1H5g12434 | CX5g039543 | LOC_Os01g63800 | Os05g0447000 | - | Detail |
| C2H5g25449 | 5:18,410,080-18,415,878 | - | C1H5g27944 | CX5g036820 | LOC_Os05g37470 | Os05g0447200 | - | Detail |
| C2H5g25292 | 5:18,425,436-18,441,877 | - | C1H5g12420 | CX5g036851 | LOC_Os05g37500 | Os05g0447580 | - | Detail |
| C2H5g15162 | 5:18,445,977-18,448,203 | - | C1H5g24273 | CX5g040386 | LOC_Os05g37520 | Os05g0447700 | - | Detail |
| C2H5g07457 | 5:18,457,491-18,457,937 | + | - | CX5g039654 | LOC_Os05g37530 | Os05g0447800 | - | Detail |
| C2H5g12773 | 5:18,458,025-18,458,369 | + | - | - | - | - | - | Detail |
| C2H5g11261 | 5:18,464,827-18,468,904 | + | C1H5g03822 | CX5g039030 | LOC_Os05g37600 | Os05g0448300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |