| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g28114 | 9:127,927-128,471 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g14009 | 9:138,087-138,631 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g27378 | 9:148,248-148,792 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g01621 | 9:158,408-158,952 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g09939 | 9:168,569-169,113 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g10841 | 9:222,155-222,469 | + | - | - | - | - | - | Detail |
| C1H9g20378 | 9:225,139-229,991 | - | C2H9g07486 | CX9g055204 | LOC_Os09g01140 | Os09g0100800 | OsGeBP11 | Detail |
| C1H9g29200 | 9:259,419-263,710 | - | C2H9g02141 | CX9g056163 | LOC_Os09g01290 | Os09g0101100 | - | Detail |
| C1H9g04128 | 9:301,326-311,063 | - | C2H9g15899 | CX9g055897 | LOC_Os09g01360 | Os09g0101800 | - | Detail |
| C1H9g17462 | 9:311,725-312,382 | - | C2H9g15899 | CX9g055897 | LOC_Os09g01360 | Os09g0101800 | - | Detail |
| C1H9g17478 | 9:331,713-332,598 | - | - | - | - | - | - | Detail |
| C1H9g27523 | 9:368,464-377,135 | + | C2H9g24411 | CX9g057870 | LOC_Os09g01590 | Os09g0103100 | - | Detail |
| C1H9g01741 | 9:380,162-385,109 | + | C2H9g22972 | CX9g057297 | LOC_Os09g01600 | Os09g0103200 | - | Detail |
| C1H9g12264 | 9:397,300-402,931 | + | C2H9g07969 | CX9g055170 | LOC_Os09g01620 | Os09g0103500 | - | Detail |
| C1H9g24389 | 9:405,379-412,173 | - | C2H9g23774 | CX9g055607 | LOC_Os09g01630 | Os09g0103600 | - | Detail |
| C1H9g06955 | 9:441,136-447,435 | + | C2H9g22729 | CX9g055907 | LOC_Os09g01650 | Os09g0103800 | - | Detail |
| C1H9g22354 | 9:471,216-474,715 | - | C2H9g16634 | CX9g057376 | LOC_Os09g01680 | Os09g0104200 | RAD51D, OsRAD51D.3, OsRAD51D, OsRad51D | Detail |
| C1H9g21586 | 9:474,785-477,542 | + | C2H9g14701 | - | LOC_Os09g01690 | Os09g0104300 | - | Detail |
| C1H9g13033 | 9:512,612-515,182 | - | C2H9g17453 | CX9g054917 | LOC_Os09g01790 | - | - | Detail |
| C1H9g05252 | 9:558,682-560,315 | + | C2H9g11873 | CX9g056345 | LOC_Os07g15420 | Os09g0499600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g30555 | 3:9,896,401-9,897,018 | + | C1H3g30348 | CX3g030611 | LOC_Os03g19780 | Os03g0311600 | - | Detail |
| C2H3g20097 | 3:9,924,788-9,936,112 | + | C1H3g27309 | CX3g025645 | LOC_Os03g19870 | Os03g0312600 | - | Detail |
| C2H3g03722 | 3:9,927,638-9,929,795 | - | C1H3g28649 | CX3g026953 | LOC_Os03g19840 | Os03g0312300 | - | Detail |
| C2H3g16430 | 3:9,939,947-9,942,748 | + | C1H3g17775 | CX3g029208 | LOC_Os03g19890 | Os03g0313000 | - | Detail |
| C2H3g25727 | 3:9,943,750-9,946,030 | - | C1H3g19322 | CX3g025344 | LOC_Os03g19900 | Os03g0313100 | - | Detail |
| C2H3g16070 | 3:9,962,482-9,967,523 | - | C1H3g29669 | CX3g026685 | LOC_Os03g19920 | Os03g0313300 | - | Detail |
| C2H3g06268 | 3:9,972,081-9,976,053 | + | C1H3g10646 | CX3g029276 | LOC_Os03g19930 | Os03g0313600 | - | Detail |
| C2H3g30521 | 3:9,980,242-9,980,544 | - | C1H3g19201 | CX3g031341 | LOC_Os03g19940 | Os03g0313800 | - | Detail |
| C2H3g00659 | 3:9,985,452-9,989,194 | + | C1H3g16128 | CX3g028576 | LOC_Os03g19960 | Os03g0314100 | - | Detail |
| C2H3g06742 | 3:9,989,624-9,994,926 | - | C1H3g20812 | CX3g025949 | LOC_Os03g19970 | Os03g0314200 | - | Detail |
| C2H3g04215 | 3:9,999,494-10,001,440 | + | C1H3g05706 | CX3g028739 | LOC_Os03g19980 | Os03g0314400 | - | Detail |
| C2H3g25214 | 3:10,012,256-10,015,341 | + | C1H3g20485 | CX3g029467 | LOC_Os03g19990 | Os03g0314500 | - | Detail |
| C2H3g21031 | 3:10,019,797-10,021,050 | + | C1H3g18195 | CX3g027957 | LOC_Os03g20010 | Os03g0314700 | - | Detail |
| C2H3g01699 | 3:10,024,031-10,024,813 | + | C1H3g02376 | CX3g027957 | - | - | - | Detail |
| C2H3g06553 | 3:10,032,472-10,037,012 | - | C1H3g19914 | CX3g027685 | LOC_Os03g20020 | Os03g0314800 | OsNIN1 | Detail |
| C2H3g07740 | 3:10,039,607-10,041,751 | + | C1H3g29631 | CX3g026874 | - | - | - | Detail |
| C2H3g15105 | 3:10,054,718-10,056,834 | - | C1H3g14664 | CX3g029724 | LOC_Os03g20090 | Os03g0315400 | OsMYB2 | Detail |
| C2H3g14730 | 3:10,079,852-10,084,190 | - | C1H3g20197 | CX3g031333 | LOC_Os03g20100 | Os03g0315800 | ASL4 | Detail |
| C2H3g02965 | 3:10,095,893-10,097,578 | + | C1H3g21365 | CX3g026763 | LOC_Os03g20120 | Os03g0316200 | OsGolS1 | Detail |
| C2H3g20528 | 3:10,108,363-10,111,015 | + | C1H3g25401 | CX3g027966 | LOC_Os03g20170 | Os03g0316900 | OsABCI16 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |