| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g28114 | 9:127,927-128,471 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g14009 | 9:138,087-138,631 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g27378 | 9:148,248-148,792 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g01621 | 9:158,408-158,952 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g09939 | 9:168,569-169,113 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g10841 | 9:222,155-222,469 | + | - | - | - | - | - | Detail |
| C1H9g20378 | 9:225,139-229,991 | - | C2H9g07486 | CX9g055204 | LOC_Os09g01140 | Os09g0100800 | OsGeBP11 | Detail |
| C1H9g29200 | 9:259,419-263,710 | - | C2H9g02141 | CX9g056163 | LOC_Os09g01290 | Os09g0101100 | - | Detail |
| C1H9g04128 | 9:301,326-311,063 | - | C2H9g15899 | CX9g055897 | LOC_Os09g01360 | Os09g0101800 | - | Detail |
| C1H9g17462 | 9:311,725-312,382 | - | C2H9g15899 | CX9g055897 | LOC_Os09g01360 | Os09g0101800 | - | Detail |
| C1H9g17478 | 9:331,713-332,598 | - | - | - | - | - | - | Detail |
| C1H9g27523 | 9:368,464-377,135 | + | C2H9g24411 | CX9g057870 | LOC_Os09g01590 | Os09g0103100 | - | Detail |
| C1H9g01741 | 9:380,162-385,109 | + | C2H9g22972 | CX9g057297 | LOC_Os09g01600 | Os09g0103200 | - | Detail |
| C1H9g12264 | 9:397,300-402,931 | + | C2H9g07969 | CX9g055170 | LOC_Os09g01620 | Os09g0103500 | - | Detail |
| C1H9g24389 | 9:405,379-412,173 | - | C2H9g23774 | CX9g055607 | LOC_Os09g01630 | Os09g0103600 | - | Detail |
| C1H9g06955 | 9:441,136-447,435 | + | C2H9g22729 | CX9g055907 | LOC_Os09g01650 | Os09g0103800 | - | Detail |
| C1H9g22354 | 9:471,216-474,715 | - | C2H9g16634 | CX9g057376 | LOC_Os09g01680 | Os09g0104200 | RAD51D, OsRAD51D.3, OsRAD51D, OsRad51D | Detail |
| C1H9g21586 | 9:474,785-477,542 | + | C2H9g14701 | - | LOC_Os09g01690 | Os09g0104300 | - | Detail |
| C1H9g13033 | 9:512,612-515,182 | - | C2H9g17453 | CX9g054917 | LOC_Os09g01790 | - | - | Detail |
| C1H9g05252 | 9:558,682-560,315 | + | C2H9g11873 | CX9g056345 | LOC_Os07g15420 | Os09g0499600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g13747 | 2:18,902,507-18,906,703 | - | C1H2g15794 | CX2g019734 | LOC_Os02g33430 | Os02g0537500 | OsE2F1 | Detail |
| C2H2g14839 | 2:18,918,860-18,922,514 | + | C1H2g00165 | CX2g021967 | LOC_Os02g33450 | Os02g0537700 | OsPRX2, BAS1 | Detail |
| C2H2g12808 | 2:18,932,821-18,934,086 | + | C1H2g04485 | CX2g022895 | LOC_Os02g33460 | Os02g0464900 | - | Detail |
| C2H2g21401 | 2:18,934,981-18,936,559 | + | C1H2g04485 | CX2g022895 | LOC_Os02g33460 | Os02g0537800 | - | Detail |
| C2H2g16541 | 2:18,945,121-18,953,800 | - | C1H2g09421 | CX2g020263 | LOC_Os02g33490 | Os02g0537900 | - | Detail |
| C2H2g20516 | 2:18,959,888-18,963,743 | - | C1H2g07638 | CX2g024463 | LOC_Os02g33500 | Os02g0538000 | LAS, TSV2 | Detail |
| C2H2g12718 | 2:18,976,845-18,979,545 | - | C1H2g24278 | CX2g023203 | LOC_Os02g33560 | Os02g0538900 | - | Detail |
| C2H2g17127 | 2:18,979,991-18,981,007 | - | C1H2g09807 | CX2g023203 | LOC_Os02g33560 | Os02g0538900 | - | Detail |
| C2H2g29527 | 2:18,985,505-18,989,694 | + | C1H2g26950 | CX2g019702 | LOC_Os02g33580 | Os02g0539100 | - | Detail |
| C2H2g02484 | 2:19,020,494-19,028,794 | + | C1H2g13439 | CX2g024045 | LOC_Os02g33610 | Os02g0539600 | GRY79 | Detail |
| C2H2g28635 | 2:19,035,111-19,037,281 | - | C1H2g29583 | CX2g022464 | LOC_Os02g33630 | - | - | Detail |
| C2H2g06091 | 2:19,037,435-19,038,622 | - | C1H2g29583 | CX2g022464 | LOC_Os02g33630 | Os02g0539900 | - | Detail |
| C2H2g25081 | 2:19,063,816-19,064,076 | - | C1H2g31833 | - | - | - | - | Detail |
| C2H2g08904 | 2:19,080,164-19,080,859 | + | - | - | - | - | - | Detail |
| C2H2g28169 | 2:19,116,866-19,120,627 | + | C1H2g12544 | CX2g022926 | LOC_Os02g33710 | Os02g0541325 | - | Detail |
| C2H2g10478 | 2:19,131,846-19,133,809 | - | C1H2g02670 | CX2g022361 | LOC_Os02g33730 | Os02g0541700 | - | Detail |
| C2H2g27952 | 2:19,138,960-19,139,352 | + | C1H2g31676 | CX2g022174 | LOC_Os02g33740 | Os02g0541900 | - | Detail |
| C2H2g00187 | 2:19,142,202-19,147,361 | - | C1H2g30293 | CX2g018878 | LOC_Os02g33750 | Os02g0542200 | - | Detail |
| C2H2g04714 | 2:19,157,633-19,157,993 | + | - | - | - | Os02g0542450 | - | Detail |
| C2H2g23863 | 2:19,159,159-19,160,649 | + | C1H2g07889 | CX2g023080 | LOC_Os02g33780 | Os02g0542500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |