| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g28114 | 9:127,927-128,471 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g14009 | 9:138,087-138,631 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g27378 | 9:148,248-148,792 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g01621 | 9:158,408-158,952 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g09939 | 9:168,569-169,113 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g10841 | 9:222,155-222,469 | + | - | - | - | - | - | Detail |
| C1H9g20378 | 9:225,139-229,991 | - | C2H9g07486 | CX9g055204 | LOC_Os09g01140 | Os09g0100800 | OsGeBP11 | Detail |
| C1H9g29200 | 9:259,419-263,710 | - | C2H9g02141 | CX9g056163 | LOC_Os09g01290 | Os09g0101100 | - | Detail |
| C1H9g04128 | 9:301,326-311,063 | - | C2H9g15899 | CX9g055897 | LOC_Os09g01360 | Os09g0101800 | - | Detail |
| C1H9g17462 | 9:311,725-312,382 | - | C2H9g15899 | CX9g055897 | LOC_Os09g01360 | Os09g0101800 | - | Detail |
| C1H9g17478 | 9:331,713-332,598 | - | - | - | - | - | - | Detail |
| C1H9g27523 | 9:368,464-377,135 | + | C2H9g24411 | CX9g057870 | LOC_Os09g01590 | Os09g0103100 | - | Detail |
| C1H9g01741 | 9:380,162-385,109 | + | C2H9g22972 | CX9g057297 | LOC_Os09g01600 | Os09g0103200 | - | Detail |
| C1H9g12264 | 9:397,300-402,931 | + | C2H9g07969 | CX9g055170 | LOC_Os09g01620 | Os09g0103500 | - | Detail |
| C1H9g24389 | 9:405,379-412,173 | - | C2H9g23774 | CX9g055607 | LOC_Os09g01630 | Os09g0103600 | - | Detail |
| C1H9g06955 | 9:441,136-447,435 | + | C2H9g22729 | CX9g055907 | LOC_Os09g01650 | Os09g0103800 | - | Detail |
| C1H9g22354 | 9:471,216-474,715 | - | C2H9g16634 | CX9g057376 | LOC_Os09g01680 | Os09g0104200 | RAD51D, OsRAD51D.3, OsRAD51D, OsRad51D | Detail |
| C1H9g21586 | 9:474,785-477,542 | + | C2H9g14701 | - | LOC_Os09g01690 | Os09g0104300 | - | Detail |
| C1H9g13033 | 9:512,612-515,182 | - | C2H9g17453 | CX9g054917 | LOC_Os09g01790 | - | - | Detail |
| C1H9g05252 | 9:558,682-560,315 | + | C2H9g11873 | CX9g056345 | LOC_Os07g15420 | Os09g0499600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g27065 | 1:5,526,420-5,532,742 | + | C1H1g05723 | CX1g004005 | LOC_Os01g11580 | Os01g0214300 | - | Detail |
| C2H1g13662 | 1:5,533,210-5,535,143 | + | C1H1g20464 | CX1g001697 | LOC_Os01g11590 | Os01g0214400 | - | Detail |
| C2H1g29223 | 1:5,537,297-5,537,649 | + | C1H1g07596 | CX1g002606 | LOC_Os01g11600 | Os01g0214500 | - | Detail |
| C2H1g17558 | 1:5,543,018-5,545,794 | + | C1H1g31450 | CX1g003813 | LOC_Os01g11620 | Os01g0214600 | - | Detail |
| C2H1g00701 | 1:5,552,051-5,556,701 | + | C1H1g01706 | CX1g003813 | LOC_Os01g11650 | Os01g0214800 | - | Detail |
| C2H1g14450 | 1:5,562,690-5,566,269 | + | C1H1g22226 | CX1g003813 | LOC_Os01g11660 | Os01g0215000 | - | Detail |
| C2H1g14703 | 1:5,570,539-5,571,932 | + | C1H1g24683 | CX1g003813 | LOC_Os01g11700 | Os01g0215500 | - | Detail |
| C2H1g12816 | 1:5,578,939-5,581,890 | + | C1H1g11193 | CX1g003813 | LOC_Os01g11710 | Os01g0215700 | - | Detail |
| C2H1g20228 | 1:5,584,360-5,586,679 | - | C1H1g14011 | CX1g000579 | LOC_Os01g10820 | Os01g0373400 | - | Detail |
| C2H1g10285 | 1:5,615,867-5,618,728 | + | C1H1g26872 | CX1g003813 | LOC_Os01g11730 | Os01g0216000 | - | Detail |
| C2H1g21387 | 1:5,622,122-5,626,889 | + | C1H1g24880 | CX1g003813 | LOC_Os01g11740 | Os01g0216300 | - | Detail |
| C2H1g23772 | 1:5,632,183-5,634,858 | + | C1H1g19866 | CX1g003813 | LOC_Os01g11750 | Os01g0216400 | - | Detail |
| C2H1g22830 | 1:5,636,756-5,638,743 | + | C1H1g19122 | CX1g003813 | LOC_Os01g11760 | Os01g0216500 | - | Detail |
| C2H1g08002 | 1:5,643,760-5,647,404 | + | C1H1g31618 | CX1g003813 | LOC_Os01g11790 | Os01g0216900 | - | Detail |
| C2H1g01657 | 1:5,651,408-5,655,330 | - | C1H1g11369 | CX1g002873 | LOC_Os01g11810 | Os01g0217000 | - | Detail |
| C2H1g27711 | 1:5,658,839-5,659,959 | - | C1H1g25421 | CX1g001632 | LOC_Os01g11830 | Os01g0347600 | - | Detail |
| C2H1g08464 | 1:5,663,993-5,664,511 | + | C1H1g15985 | CX1g005713 | LOC_Os01g11840 | Os01g0347500 | - | Detail |
| C2H1g19219 | 1:5,664,574-5,665,173 | + | C1H1g14222 | CX1g005713 | LOC_Os01g11840 | Os01g0347600 | - | Detail |
| C2H1g05180 | 1:5,665,907-5,668,754 | - | C1H1g06189 | CX1g000279 | LOC_Os01g11850 | Os01g0217400 | - | Detail |
| C2H1g00358 | 1:5,672,621-5,680,183 | + | C1H1g09690 | CX1g005289 | LOC_Os01g11860 | Os01g0217500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |