| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g28114 | 9:127,927-128,471 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g14009 | 9:138,087-138,631 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g27378 | 9:148,248-148,792 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g01621 | 9:158,408-158,952 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g09939 | 9:168,569-169,113 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g10841 | 9:222,155-222,469 | + | - | - | - | - | - | Detail |
| C1H9g20378 | 9:225,139-229,991 | - | C2H9g07486 | CX9g055204 | LOC_Os09g01140 | Os09g0100800 | OsGeBP11 | Detail |
| C1H9g29200 | 9:259,419-263,710 | - | C2H9g02141 | CX9g056163 | LOC_Os09g01290 | Os09g0101100 | - | Detail |
| C1H9g04128 | 9:301,326-311,063 | - | C2H9g15899 | CX9g055897 | LOC_Os09g01360 | Os09g0101800 | - | Detail |
| C1H9g17462 | 9:311,725-312,382 | - | C2H9g15899 | CX9g055897 | LOC_Os09g01360 | Os09g0101800 | - | Detail |
| C1H9g17478 | 9:331,713-332,598 | - | - | - | - | - | - | Detail |
| C1H9g27523 | 9:368,464-377,135 | + | C2H9g24411 | CX9g057870 | LOC_Os09g01590 | Os09g0103100 | - | Detail |
| C1H9g01741 | 9:380,162-385,109 | + | C2H9g22972 | CX9g057297 | LOC_Os09g01600 | Os09g0103200 | - | Detail |
| C1H9g12264 | 9:397,300-402,931 | + | C2H9g07969 | CX9g055170 | LOC_Os09g01620 | Os09g0103500 | - | Detail |
| C1H9g24389 | 9:405,379-412,173 | - | C2H9g23774 | CX9g055607 | LOC_Os09g01630 | Os09g0103600 | - | Detail |
| C1H9g06955 | 9:441,136-447,435 | + | C2H9g22729 | CX9g055907 | LOC_Os09g01650 | Os09g0103800 | - | Detail |
| C1H9g22354 | 9:471,216-474,715 | - | C2H9g16634 | CX9g057376 | LOC_Os09g01680 | Os09g0104200 | RAD51D, OsRAD51D.3, OsRAD51D, OsRad51D | Detail |
| C1H9g21586 | 9:474,785-477,542 | + | C2H9g14701 | - | LOC_Os09g01690 | Os09g0104300 | - | Detail |
| C1H9g13033 | 9:512,612-515,182 | - | C2H9g17453 | CX9g054917 | LOC_Os09g01790 | - | - | Detail |
| C1H9g05252 | 9:558,682-560,315 | + | C2H9g11873 | CX9g056345 | LOC_Os07g15420 | Os09g0499600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g05303 | 1:2,652,627-2,653,436 | - | C1H1g21585 | CX1g002516 | LOC_Os01g06580 | Os01g0159200 | - | Detail |
| C2H1g08729 | 1:2,655,546-2,656,988 | - | C1H1g02418 | CX1g003405 | LOC_Os01g06590 | Os01g0159300 | - | Detail |
| C2H1g06991 | 1:2,664,555-2,669,978 | - | C1H1g01252 | CX1g003155 | LOC_Os01g06600 | Os01g0159400 | - | Detail |
| C2H1g28217 | 1:2,673,049-2,673,432 | - | C1H1g21645 | CX1g001170 | LOC_Os01g06630 | Os01g0159600 | OsLEA1a | Detail |
| C2H1g08769 | 1:2,679,190-2,680,349 | + | C1H1g22893 | CX1g001891 | LOC_Os01g06640 | Os01g0159800 | OsbHLH035 | Detail |
| C2H1g08402 | 1:2,682,283-2,685,661 | - | C1H1g13369 | CX1g004847 | LOC_Os01g06660 | Os01g0160100 | - | Detail |
| C2H1g02115 | 1:2,693,538-2,696,603 | + | C1H1g02072 | CX1g004872 | LOC_Os01g06760 | Os01g0160700 | - | Detail |
| C2H1g26663 | 1:2,716,473-2,717,636 | - | - | - | - | Os01g0162001 | - | Detail |
| C2H1g19858 | 1:2,732,902-2,737,578 | + | C1H1g01281 | CX1g005047 | LOC_Os01g06836 | Os01g0162300 | - | Detail |
| C2H1g17754 | 1:2,738,645-2,739,926 | + | C1H1g22094 | CX1g004872 | LOC_Os01g06920 | Os01g0163000 | - | Detail |
| C2H1g18716 | 1:2,748,476-2,751,319 | + | C1H1g25834 | CX1g001373 | LOC_Os01g06760 | Os01g0161000 | - | Detail |
| C2H1g13308 | 1:2,753,733-2,754,559 | + | C1H1g28353 | CX1g004872 | LOC_Os01g06790 | Os01g0161300 | - | Detail |
| C2H1g27758 | 1:2,755,486-2,759,080 | + | C1H1g28353 | CX1g002328 | LOC_Os01g06790 | Os01g0781600 | - | Detail |
| C2H1g15048 | 1:2,759,077-2,759,795 | - | - | - | - | Os01g0161200 | - | Detail |
| C2H1g24385 | 1:2,764,123-2,766,426 | + | C1H1g24738 | CX1g001373 | LOC_Os01g06820 | Os01g0162200 | - | Detail |
| C2H1g16557 | 1:2,767,459-2,770,121 | + | C1H1g01281 | CX1g002328 | LOC_Os01g06836 | Os01g0162300 | - | Detail |
| C2H1g16427 | 1:2,772,743-2,773,407 | + | C1H1g06036 | CX1g001373 | LOC_Os01g06870 | Os01g0162200 | - | Detail |
| C2H1g10540 | 1:2,775,436-2,777,188 | - | - | - | - | - | - | Detail |
| C2H1g22938 | 1:2,783,314-2,784,570 | + | - | - | LOC_Os01g06882 | Os01g0162400 | - | Detail |
| C2H1g07682 | 1:2,784,908-2,788,565 | + | C1H1g04251 | CX1g004872 | LOC_Os01g06920 | Os01g0162500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |