| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g14820 | 1:29,751,880-29,754,993 | + | C2H1g11023 | CX1g000763 | LOC_Os01g57510 | Os01g0784500 | - | Detail |
| C1H1g07023 | 1:29,758,278-29,760,851 | + | C2H1g25310 | CX1g003790 | LOC_Os01g57550 | Os01g0784600 | - | Detail |
| C1H1g21188 | 1:29,761,528-29,769,678 | - | C2H1g01398 | CX1g000103 | LOC_Os01g57560 | Os01g0784700 | SDRLK-3 | Detail |
| C1H1g11148 | 1:29,786,823-29,790,540 | + | C2H1g01374 | CX1g002544 | LOC_Os01g57570 | Os01g0784800 | - | Detail |
| C1H1g11922 | 1:29,794,421-29,796,493 | - | C2H1g08294 | CX1g002670 | LOC_Os01g57580 | Os01g0784900 | NSP1, OsbHLH069 | Detail |
| C1H1g08010 | 1:29,806,734-29,807,372 | - | C2H1g25385 | - | - | Os01g0834150 | - | Detail |
| C1H1g05872 | 1:29,829,049-29,831,616 | + | C2H1g21764 | CX1g005232 | LOC_Os01g57610 | Os01g0785400 | OsGH3.1, LC1 | Detail |
| C1H1g19150 | 1:29,837,840-29,838,556 | - | C2H1g24292 | CX1g002870 | LOC_Os01g57620 | Os01g0785600 | - | Detail |
| C1H1g10218 | 1:29,838,761-29,840,089 | + | C2H1g12363 | CX1g003522 | LOC_Os01g57630 | Os01g0785700 | - | Detail |
| C1H1g15011 | 1:29,845,013-29,847,654 | - | C2H1g16138 | CX1g000430 | LOC_Os01g57650 | Os01g0785900 | - | Detail |
| C1H1g29459 | 1:29,857,127-29,857,947 | - | C2H1g21172 | CX1g001412 | LOC_Os01g57690 | Os01g0786500 | - | Detail |
| C1H1g23885 | 1:29,860,143-29,860,560 | - | C2H1g07023 | CX1g005381 | - | - | - | Detail |
| C1H1g17182 | 1:29,861,278-29,863,087 | - | C2H1g14643 | CX1g004409 | LOC_Os01g57700 | Os01g0786700 | - | Detail |
| C1H1g27007 | 1:29,864,481-29,874,668 | - | C2H1g14075 | CX1g000743 | LOC_Os01g57720 | Os01g0786900 | - | Detail |
| C1H1g05118 | 1:29,883,540-29,884,956 | - | C2H1g26053 | CX1g000500 | LOC_Os01g57730 | Os01g0787000 | - | Detail |
| C1H1g29242 | 1:29,889,665-29,892,842 | + | C2H1g18114 | CX1g006437 | LOC_Os01g57740 | Os01g0787400 | - | Detail |
| C1H1g15970 | 1:29,899,441-29,904,832 | + | C2H1g16467 | CX1g000958 | LOC_Os01g57770 | Os01g0787600 | - | Detail |
| C1H1g30906 | 1:29,908,071-29,908,635 | + | C2H1g05078 | CX1g003160 | - | Os01g0788200 | - | Detail |
| C1H1g10008 | 1:29,913,354-29,918,448 | + | C2H1g15125 | CX1g004660 | LOC_Os01g57854 | Os01g0788400 | OsPME1 | Detail |
| C1H1g01725 | 1:29,919,068-29,921,791 | - | C2H1g08239 | CX1g002342 | LOC_Os01g57870 | Os01g0788500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g11446 | 3:31,978,001-31,983,295 | + | C1H3g14322 | CX3g028534 | LOC_Os03g61890 | Os03g0835100 | - | Detail |
| C2H3g28021 | 3:31,989,557-31,992,407 | + | C1H3g03072 | CX3g026121 | LOC_Os03g61920 | Os03g0835400 | - | Detail |
| C2H3g05961 | 3:31,992,575-31,999,724 | - | C1H3g01425 | CX3g025800 | LOC_Os03g61930 | Os03g0835600 | - | Detail |
| C2H3g09738 | 3:32,001,534-32,007,999 | + | C1H3g11697 | CX3g026666 | LOC_Os03g61950 | Os03g0835800 | GPA3 | Detail |
| C2H3g22082 | 3:32,009,070-32,010,720 | + | C1H3g21220 | CX3g029438 | LOC_Os03g61960 | Os03g0835900 | - | Detail |
| C2H3g02537 | 3:32,012,174-32,015,962 | - | C1H3g16687 | CX3g027328 | LOC_Os03g61970 | Os03g0836000 | - | Detail |
| C2H3g21749 | 3:32,018,177-32,019,908 | + | C1H3g24245 | CX3g025105 | LOC_Os03g61980 | Os03g0602300 | OsBRD1, OsDWARF | Detail |
| C2H3g23676 | 3:32,020,217-32,028,395 | - | C1H3g15668 | CX3g029549 | - | - | - | Detail |
| C2H3g00553 | 3:32,032,293-32,033,259 | + | C1H3g24245 | CX3g025105 | LOC_Os03g61980 | Os03g0227700 | OsDWF4, OsDWARF4, CYP90B2 | Detail |
| C2H3g22451 | 3:32,033,408-32,036,698 | - | C1H3g15438 | CX3g025476 | LOC_Os03g61990 | Os03g0836200 | - | Detail |
| C2H3g24609 | 3:32,044,391-32,045,674 | - | C1H3g19672 | CX3g028617 | LOC_Os03g62030 | Os03g0836500 | - | Detail |
| C2H3g00356 | 3:32,055,203-32,057,725 | + | C1H3g28661 | CX3g026385 | LOC_Os03g62060 | Os03g0836800 | OsAH6 | Detail |
| C2H3g06920 | 3:32,059,473-32,063,273 | - | C1H3g07688 | CX3g028024 | LOC_Os03g62080 | Os03g0837000 | - | Detail |
| C2H3g14006 | 3:32,075,045-32,077,216 | + | C1H3g28661 | CX3g026385 | LOC_Os03g62060 | Os03g0836800 | OsAH6 | Detail |
| C2H3g05839 | 3:32,077,789-32,092,956 | - | C1H3g07688 | CX3g028024 | LOC_Os03g62080 | Os03g0837000 | - | Detail |
| C2H3g09641 | 3:32,096,528-32,102,341 | + | C1H3g22493 | CX3g029422 | LOC_Os03g62090 | Os03g0837100 | - | Detail |
| C2H3g16015 | 3:32,109,046-32,109,243 | + | C1H3g21977 | - | LOC_Os03g62110 | Os03g0837300 | OsNaPRT1, LTS1 | Detail |
| C2H3g09352 | 3:32,109,373-32,115,518 | + | C1H3g11581 | CX3g030206 | LOC_Os03g62110 | Os04g0429800 | - | Detail |
| C2H3g20340 | 3:32,128,103-32,130,514 | - | C1H3g11651 | CX3g026601 | LOC_Os03g62160 | Os03g0837800 | - | Detail |
| C2H3g14011 | 3:32,131,995-32,137,231 | + | C1H3g23631 | CX3g030122 | LOC_Os03g62170 | Os03g0837900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |