| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g11621 | 1:28,908,449-28,912,093 | - | C2H1g27726 | CX1g002848 | LOC_Os01g56130 | Os01g0766900 | OsCSLC1 | Detail |
| C1H1g23773 | 1:28,917,622-28,922,860 | - | C2H1g25186 | CX1g006079 | LOC_Os01g56140 | Os01g0767000 | OsNMCP1 | Detail |
| C1H1g07882 | 1:28,924,508-28,928,418 | - | C2H1g12650 | CX1g002490 | LOC_Os01g56150 | Os01g0767100 | - | Detail |
| C1H1g20009 | 1:28,934,059-28,937,050 | + | C2H1g17994 | CX1g005086 | LOC_Os01g56180 | Os01g0767600 | - | Detail |
| C1H1g00590 | 1:28,937,596-28,947,938 | + | C2H1g02356 | CX1g007067 | LOC_Os01g56190 | Os01g0767700 | - | Detail |
| C1H1g02614 | 1:28,954,358-28,957,527 | + | C2H1g28755 | CX1g005068 | LOC_Os01g56200 | Os01g0767900 | - | Detail |
| C1H1g14323 | 1:28,960,257-28,969,822 | - | C2H1g23081 | CX1g000886 | LOC_Os01g45880 | Os01g0646800 | - | Detail |
| C1H1g10000 | 1:28,970,638-28,972,135 | - | C2H1g28135 | CX1g005201 | LOC_Os01g56210 | Os01g0768100 | - | Detail |
| C1H1g17993 | 1:28,973,342-28,979,604 | - | C2H1g30374 | CX1g001137 | LOC_Os01g56230 | Os01g0768200 | - | Detail |
| C1H1g11693 | 1:28,981,958-28,983,986 | - | C2H1g26550 | CX1g002315 | LOC_Os01g56235 | Os01g0768300 | - | Detail |
| C1H1g01409 | 1:28,985,770-28,986,138 | + | C2H1g30140 | CX1g002605 | LOC_Os01g56240 | Os01g0768333 | OsSAUR2 | Detail |
| C1H1g26530 | 1:28,994,882-29,003,824 | + | C2H1g24802 | CX1g000267 | LOC_Os01g56290 | Os01g0768700 | - | Detail |
| C1H1g30094 | 1:29,018,079-29,024,756 | + | C2H1g11170 | CX1g001998 | LOC_Os01g56300 | Os01g0769000 | - | Detail |
| C1H1g21992 | 1:29,025,536-29,028,390 | + | C2H1g06053 | CX1g000941 | LOC_Os01g56310 | Os05g0511500 | - | Detail |
| C1H1g21169 | 1:29,039,506-29,045,221 | + | C2H1g08866 | CX1g000768 | LOC_Os01g56320 | Os01g0769200 | - | Detail |
| C1H1g11804 | 1:29,050,520-29,053,213 | + | C2H1g11294 | CX1g006832 | LOC_Os01g56330 | Os01g0769700 | - | Detail |
| C1H1g24029 | 1:29,055,074-29,061,484 | + | C2H1g27214 | CX1g006851 | LOC_Os01g56350 | Os01g0769900 | TCM1 | Detail |
| C1H1g10932 | 1:29,060,139-29,064,004 | - | C2H1g25114 | CX1g006734 | LOC_Os01g56360 | Os01g0770000 | - | Detail |
| C1H1g12311 | 1:29,066,256-29,072,055 | - | C2H1g18480 | CX1g006846 | LOC_Os01g56360 | Os01g0770000 | - | Detail |
| C1H1g07110 | 1:29,080,501-29,082,096 | - | C2H10g16117 | CX1g000584 | LOC_Os01g56380 | Os01g0770200 | TYDC, TyDC, OsTyDC, OsTYDC, TDC | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H12g14134 | 12:8,594,817-8,595,686 | - | C1H12g16114 | CX12g015735 | LOC_Os12g17840 | - | - | Detail |
| C2H12g03927 | 12:8,633,430-8,635,140 | - | C1H12g18535 | CX12g017377 | LOC_Os12g17880 | Os12g0277000 | - | Detail |
| C2H12g28494 | 12:8,659,354-8,664,726 | - | C1H12g24761 | CX12g017705 | LOC_Os12g17900 | Os12g0277400 | - | Detail |
| C2H12g12318 | 12:8,671,395-8,675,706 | + | C1H12g06371 | CX12g016191 | LOC_Os12g17910 | Os12g0277500 | - | Detail |
| C2H12g11764 | 12:8,683,425-8,683,895 | - | C1H12g01376 | CX12g018723 | LOC_Os12g17930 | Os12g0277900 | - | Detail |
| C2H12g20076 | 12:8,694,942-8,695,939 | - | C1H12g09603 | CX12g016247 | LOC_Os12g17950 | Os12g0277900 | - | Detail |
| C2H12g27239 | 12:8,720,382-8,720,927 | + | - | CX12g015220 | - | - | - | Detail |
| C2H12g07192 | 12:8,723,724-8,723,999 | - | C1H12g22417 | CX12g018234 | LOC_Os12g18070 | - | - | Detail |
| C2H12g19217 | 12:8,724,282-8,727,154 | - | C1H12g22417 | CX12g018234 | LOC_Os12g18070 | - | - | Detail |
| C2H12g14594 | 12:8,740,359-8,745,850 | - | C1H12g24393 | CX12g016938 | LOC_Os12g18110 | Os12g0278700 | - | Detail |
| C2H12g02522 | 12:8,754,421-8,762,294 | - | C1H12g12740 | CX12g017296 | LOC_Os12g18120 | Os12g0278800 | - | Detail |
| C2H12g02056 | 12:8,768,751-8,770,601 | - | - | - | - | - | - | Detail |
| C2H12g03056 | 12:8,778,357-8,778,869 | - | - | - | - | - | - | Detail |
| C2H12g09689 | 12:8,780,025-8,787,208 | + | C1H12g06841 | CX12g016351 | LOC_Os12g18140 | Os12g0279000 | - | Detail |
| C2H12g26090 | 12:8,794,635-8,804,693 | - | C1H12g22097 | CX12g018140 | LOC_Os12g18150 | Os12g0279100 | - | Detail |
| C2H12g22060 | 12:8,828,862-8,837,600 | - | C1H12g00021 | CX12g017706 | LOC_Os12g18200 | Os12g0279600 | - | Detail |
| C2H12g17710 | 12:8,911,994-8,912,326 | - | C1H12g17326 | CX12g016617 | LOC_Os12g18220 | Os12g0280050 | - | Detail |
| C2H12g10872 | 12:8,912,815-8,917,204 | - | C1H12g11746 | CX12g016617 | LOC_Os12g18360 | Os12g0281300 | Pi-ta | Detail |
| C2H12g15312 | 12:8,929,669-8,930,998 | + | C1H12g08537 | CX12g017409 | LOC_Os12g18374 | Os12g0281600 | - | Detail |
| C2H12g30569 | 12:8,936,485-8,940,456 | + | C1H12g12461 | CX12g017409 | LOC_Os12g18374 | Os12g0281600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |