| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g11621 | 1:28,908,449-28,912,093 | - | C2H1g27726 | CX1g002848 | LOC_Os01g56130 | Os01g0766900 | OsCSLC1 | Detail |
| C1H1g23773 | 1:28,917,622-28,922,860 | - | C2H1g25186 | CX1g006079 | LOC_Os01g56140 | Os01g0767000 | OsNMCP1 | Detail |
| C1H1g07882 | 1:28,924,508-28,928,418 | - | C2H1g12650 | CX1g002490 | LOC_Os01g56150 | Os01g0767100 | - | Detail |
| C1H1g20009 | 1:28,934,059-28,937,050 | + | C2H1g17994 | CX1g005086 | LOC_Os01g56180 | Os01g0767600 | - | Detail |
| C1H1g00590 | 1:28,937,596-28,947,938 | + | C2H1g02356 | CX1g007067 | LOC_Os01g56190 | Os01g0767700 | - | Detail |
| C1H1g02614 | 1:28,954,358-28,957,527 | + | C2H1g28755 | CX1g005068 | LOC_Os01g56200 | Os01g0767900 | - | Detail |
| C1H1g14323 | 1:28,960,257-28,969,822 | - | C2H1g23081 | CX1g000886 | LOC_Os01g45880 | Os01g0646800 | - | Detail |
| C1H1g10000 | 1:28,970,638-28,972,135 | - | C2H1g28135 | CX1g005201 | LOC_Os01g56210 | Os01g0768100 | - | Detail |
| C1H1g17993 | 1:28,973,342-28,979,604 | - | C2H1g30374 | CX1g001137 | LOC_Os01g56230 | Os01g0768200 | - | Detail |
| C1H1g11693 | 1:28,981,958-28,983,986 | - | C2H1g26550 | CX1g002315 | LOC_Os01g56235 | Os01g0768300 | - | Detail |
| C1H1g01409 | 1:28,985,770-28,986,138 | + | C2H1g30140 | CX1g002605 | LOC_Os01g56240 | Os01g0768333 | OsSAUR2 | Detail |
| C1H1g26530 | 1:28,994,882-29,003,824 | + | C2H1g24802 | CX1g000267 | LOC_Os01g56290 | Os01g0768700 | - | Detail |
| C1H1g30094 | 1:29,018,079-29,024,756 | + | C2H1g11170 | CX1g001998 | LOC_Os01g56300 | Os01g0769000 | - | Detail |
| C1H1g21992 | 1:29,025,536-29,028,390 | + | C2H1g06053 | CX1g000941 | LOC_Os01g56310 | Os05g0511500 | - | Detail |
| C1H1g21169 | 1:29,039,506-29,045,221 | + | C2H1g08866 | CX1g000768 | LOC_Os01g56320 | Os01g0769200 | - | Detail |
| C1H1g11804 | 1:29,050,520-29,053,213 | + | C2H1g11294 | CX1g006832 | LOC_Os01g56330 | Os01g0769700 | - | Detail |
| C1H1g24029 | 1:29,055,074-29,061,484 | + | C2H1g27214 | CX1g006851 | LOC_Os01g56350 | Os01g0769900 | TCM1 | Detail |
| C1H1g10932 | 1:29,060,139-29,064,004 | - | C2H1g25114 | CX1g006734 | LOC_Os01g56360 | Os01g0770000 | - | Detail |
| C1H1g12311 | 1:29,066,256-29,072,055 | - | C2H1g18480 | CX1g006846 | LOC_Os01g56360 | Os01g0770000 | - | Detail |
| C1H1g07110 | 1:29,080,501-29,082,096 | - | C2H10g16117 | CX1g000584 | LOC_Os01g56380 | Os01g0770200 | TYDC, TyDC, OsTyDC, OsTYDC, TDC | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g02971 | 9:12,505,290-12,505,617 | - | C1H9g17454 | - | - | - | - | Detail |
| C2H9g25855 | 9:12,524,610-12,528,304 | + | C1H9g06238 | CX9g056267 | LOC_Os09g24900 | Os09g0415700 | - | Detail |
| C2H9g19203 | 9:12,528,295-12,535,519 | - | C1H9g17729 | CX9g055233 | LOC_Os09g24910 | Os09g0415800 | - | Detail |
| C2H9g23439 | 9:12,547,815-12,553,400 | + | C1H9g31111 | CX9g054854 | LOC_Os09g24924 | Os09g0416200 | OsSTP26 | Detail |
| C2H9g14042 | 9:12,556,441-12,561,920 | + | C1H9g25465 | CX9g057507 | LOC_Os09g24954 | Os09g0416500 | - | Detail |
| C2H9g28029 | 9:12,583,951-12,587,363 | - | C1H9g22850 | CX9g057871 | LOC_Os09g24980 | Os09g0416700 | - | Detail |
| C2H9g01617 | 9:12,601,502-12,603,185 | + | C1H9g16627 | CX9g057704 | LOC_Os09g25000 | Os09g0416900 | - | Detail |
| C2H9g07186 | 9:12,623,389-12,626,461 | - | C1H9g10214 | CX9g055541 | LOC_Os09g25040 | Os09g0417400 | - | Detail |
| C2H9g17545 | 9:12,639,583-12,640,811 | - | C1H9g04471 | CX9g055243 | LOC_Os09g25060 | Os09g0417600 | WRKY76, OsWRKY76.3 | Detail |
| C2H9g29801 | 9:12,655,535-12,657,204 | - | C1H9g20232 | CX9g055795 | LOC_Os09g25070 | Os09g0417800 | WRKY62, OsWRKY62.2 | Detail |
| C2H9g03390 | 9:12,686,145-12,688,351 | - | - | CX9g058037 | - | Os09g0418375 | - | Detail |
| C2H9g16461 | 9:12,704,946-12,705,164 | - | - | - | - | - | - | Detail |
| C2H9g11990 | 9:12,725,163-12,728,112 | - | C1H9g10222 | CX9g057653 | LOC_Os09g25150 | Os09g0419200 | - | Detail |
| C2H9g18402 | 9:12,739,673-12,740,528 | - | C1H9g03561 | CX9g055071 | - | - | - | Detail |
| C2H9g00271 | 9:12,740,841-12,742,640 | + | C1H9g27951 | CX9g056568 | LOC_Os09g25190 | Os09g0419500 | - | Detail |
| C2H9g23762 | 9:12,746,624-12,747,700 | + | C1H9g23658 | CX9g056568 | LOC_Os09g25200 | Os09g0419600 | - | Detail |
| C2H9g25913 | 9:12,749,527-12,750,967 | + | C1H9g24531 | CX9g055694 | LOC_Os09g25220 | Os09g0420000 | - | Detail |
| C2H9g01801 | 9:12,751,370-12,754,803 | + | C1H9g05253 | CX9g055694 | LOC_Os09g25260 | Os09g0420100 | - | Detail |
| C2H9g28714 | 9:12,765,045-12,768,817 | - | C1H9g21007 | CX9g055351 | LOC_Os09g25290 | Os09g0420300 | - | Detail |
| C2H9g04494 | 9:12,773,585-12,776,390 | - | C1H9g28851 | CX9g056780 | LOC_Os09g25310 | Os09g0420600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |