| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g10836 | 1:28,198,216-28,199,650 | - | C2H1g29811 | CX1g002430 | LOC_Os01g54960 | Os01g0753200 | - | Detail |
| C1H1g16292 | 1:28,200,764-28,202,409 | + | C2H1g20006 | CX1g006340 | LOC_Os01g54969 | Os01g0753300 | OsASMT1 | Detail |
| C1H1g07442 | 1:28,202,676-28,208,745 | - | C2H1g09497 | CX1g002732 | LOC_Os01g54990 | Os01g0753500 | OsARF3lb | Detail |
| C1H1g02806 | 1:28,221,205-28,222,136 | + | C2H1g17359 | CX1g006658 | LOC_Os01g55020 | Os01g0754000 | - | Detail |
| C1H1g16947 | 1:28,224,309-28,226,105 | - | C2H1g07609 | CX1g002933 | LOC_Os01g55030 | Os01g0754100 | - | Detail |
| C1H1g05578 | 1:28,227,601-28,236,955 | - | C2H1g07292 | CX1g005591 | LOC_Os01g55040 | Os01g0754200 | - | Detail |
| C1H1g11544 | 1:28,237,266-28,242,179 | - | C2H1g26542 | CX1g006946 | LOC_Os01g55050 | Os01g0754500 | - | Detail |
| C1H1g27304 | 1:28,273,856-28,282,338 | - | C2H1g25651 | CX1g006404 | LOC_Os01g55094 | Os01g0755100 | - | Detail |
| C1H1g29987 | 1:28,291,077-28,292,504 | + | C2H1g07282 | CX1g000336 | LOC_Os01g55100 | Os01g0755500 | OsPCF7, PCF7 | Detail |
| C1H1g10544 | 1:28,333,028-28,335,537 | - | C2H1g26286 | CX1g005575 | LOC_Os01g55120 | Os01g0756000 | - | Detail |
| C1H1g11346 | 1:28,340,031-28,341,059 | - | C2H1g10412 | - | LOC_Os01g55140 | Os01g0756101 | - | Detail |
| C1H1g21888 | 1:28,343,215-28,343,646 | + | C2H1g27103 | CX1g006243 | LOC_Os01g55150 | Os01g0756200 | - | Detail |
| C1H1g31515 | 1:28,344,380-28,345,306 | + | C2H1g14895 | CX1g006243 | LOC_Os01g55150 | Os01g0756200 | - | Detail |
| C1H1g02918 | 1:28,352,747-28,363,013 | - | C2H1g30168 | CX1g003911 | LOC_Os01g55170 | Os01g0756400 | - | Detail |
| C1H1g08295 | 1:28,368,293-28,372,229 | + | C2H1g05126 | CX1g003221 | LOC_Os01g55190 | Os01g0531400 | - | Detail |
| C1H1g21813 | 1:28,381,812-28,384,050 | + | C2H1g22597 | CX1g002081 | LOC_Os01g55200 | Os01g0756700 | KAT1, OsKAT1 | Detail |
| C1H1g15032 | 1:28,402,160-28,404,225 | + | C2H1g23299 | CX1g004140 | LOC_Os01g55240 | Os01g0757200 | GA2OX3, OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3 | Detail |
| C1H1g13228 | 1:28,418,667-28,422,542 | + | C2H1g18562 | CX1g001542 | LOC_Os01g55260 | Os01g0757400 | - | Detail |
| C1H1g20677 | 1:28,423,057-28,425,847 | - | C2H1g15915 | CX1g000631 | LOC_Os01g55270 | Os01g0757500 | - | Detail |
| C1H1g01435 | 1:28,432,212-28,434,104 | - | C2H1g24400 | CX1g004257 | LOC_Os01g55280 | Os01g0757600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g24728 | 3:31,316,935-31,321,724 | - | C1H3g22167 | CX3g028800 | LOC_Os03g56130 | - | - | Detail |
| C2H3g06440 | 3:31,327,754-31,331,053 | + | C1H3g01200 | CX3g025954 | LOC_Os03g60430 | Os03g0818800 | - | Detail |
| C2H3g15854 | 3:31,340,058-31,344,258 | + | C1H3g02194 | CX3g025292 | LOC_Os03g60460 | Os03g0819100 | - | Detail |
| C2H3g14507 | 3:31,344,895-31,345,709 | + | C1H3g16913 | - | LOC_Os03g60470 | Os03g0819300 | - | Detail |
| C2H3g18275 | 3:31,347,289-31,349,216 | - | C1H3g00081 | CX3g026922 | LOC_Os03g60480 | Os03g0819400 | - | Detail |
| C2H3g02705 | 3:31,353,288-31,354,452 | - | C1H3g02338 | CX3g031046 | LOC_Os03g60509 | Os03g0819600 | - | Detail |
| C2H3g09845 | 3:31,358,386-31,361,160 | - | C1H3g07063 | CX3g025306 | LOC_Os03g60520 | Os03g0819700 | - | Detail |
| C2H3g16290 | 3:31,363,594-31,366,416 | + | C1H3g11685 | CX3g026585 | LOC_Os03g60530 | Os03g0819900 | - | Detail |
| C2H3g01855 | 3:31,369,076-31,375,527 | + | C1H3g13391 | CX3g025197 | LOC_Os03g60550 | Os03g0820100 | - | Detail |
| C2H3g30643 | 3:31,383,244-31,386,657 | + | C1H3g31889 | CX3g030735 | LOC_Os03g60580 | Os03g0820500 | OsADF3 | Detail |
| C2H3g14030 | 3:31,387,363-31,389,861 | + | C1H3g18878 | CX3g026527 | LOC_Os03g60580 | Os03g0820600 | - | Detail |
| C2H3g06884 | 3:31,390,753-31,394,065 | - | C1H3g26924 | CX3g029295 | LOC_Os03g60600 | Os03g0820700 | - | Detail |
| C2H3g20559 | 3:31,396,075-31,401,135 | - | C1H3g11416 | CX3g025531 | LOC_Os03g60610 | Os03g0820900 | - | Detail |
| C2H3g05607 | 3:31,403,570-31,408,330 | + | C1H3g28279 | CX3g027512 | LOC_Os03g60620 | Os03g0821100 | - | Detail |
| C2H3g25786 | 3:31,412,729-31,414,281 | + | C1H3g25995 | CX3g030377 | LOC_Os03g60630 | Os03g0821200 | - | Detail |
| C2H3g20031 | 3:31,428,765-31,429,098 | - | C1H3g30691 | CX3g029500 | - | - | - | Detail |
| C2H3g23674 | 3:31,430,739-31,434,322 | - | C1H3g24438 | CX3g027662 | LOC_Os03g60650 | Os03g0821300 | - | Detail |
| C2H3g24002 | 3:31,449,417-31,450,208 | + | - | CX3g031271 | LOC_Os03g60660 | Os03g0821550 | - | Detail |
| C2H3g16181 | 3:31,453,728-31,454,367 | - | - | CX3g026233 | - | - | - | Detail |
| C2H3g23136 | 3:31,455,272-31,458,425 | - | C1H3g12541 | CX3g026762 | LOC_Os03g60700 | Os03g0821800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |