| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g12537 | 1:28,059,267-28,062,753 | - | C2H1g29243 | - | LOC_Os01g54670 | Os01g0750500 | - | Detail |
| C1H1g02730 | 1:28,066,645-28,070,053 | - | C2H1g03544 | CX1g001248 | LOC_Os01g54700 | Os01g0750600 | - | Detail |
| C1H1g08638 | 1:28,082,378-28,082,850 | - | C2H1g05225 | CX1g000813 | LOC_Os01g53140 | Os01g0750800 | - | Detail |
| C1H1g13664 | 1:28,092,625-28,094,528 | + | C2H1g14203 | CX1g004570 | LOC_Os12g12690 | Os01g0527900 | - | Detail |
| C1H1g18862 | 1:28,095,179-28,096,887 | - | C2H1g17996 | CX1g000494 | LOC_Os01g40070 | Os01g0872900 | - | Detail |
| C1H1g01804 | 1:28,098,181-28,099,979 | + | C2H1g14203 | CX1g004570 | LOC_Os12g07180 | Os01g0527900 | - | Detail |
| C1H1g18828 | 1:28,111,705-28,119,738 | + | C2H1g04914 | CX1g006345 | LOC_Os01g54784 | Os01g0751300 | - | Detail |
| C1H1g01340 | 1:28,124,308-28,126,973 | - | C2H1g10063 | CX1g003213 | LOC_Os01g54810 | Os01g0751600 | THIS1, This1 | Detail |
| C1H1g28508 | 1:28,129,725-28,131,757 | + | C2H1g08663 | CX1g001241 | LOC_Os01g54850 | Os01g0752100 | - | Detail |
| C1H1g19975 | 1:28,131,889-28,135,998 | - | C2H1g27818 | CX1g002849 | LOC_Os01g54860 | Os01g0752200 | NOG1 | Detail |
| C1H1g04449 | 1:28,138,360-28,140,062 | - | C2H1g21432 | CX1g004206 | LOC_Os01g54870 | Os01g0752300 | - | Detail |
| C1H1g25368 | 1:28,142,139-28,143,928 | - | C2H1g04122 | CX1g006705 | LOC_Os01g54880 | Os01g0752400 | - | Detail |
| C1H1g06182 | 1:28,148,730-28,154,643 | - | C2H1g02082 | CX1g007206 | LOC_Os01g54900 | Os01g0752600 | - | Detail |
| C1H1g10866 | 1:28,154,876-28,162,682 | + | C2H1g30106 | CX1g004902 | LOC_Os01g54910 | Os01g0752700 | - | Detail |
| C1H1g19556 | 1:28,164,498-28,168,140 | + | C2H1g14113 | - | LOC_Os01g54980 | Os01g0753400 | - | Detail |
| C1H1g31047 | 1:28,169,347-28,172,826 | + | C2H1g30674 | CX1g005633 | LOC_Os01g47530 | Os01g0897000 | OsCDKB1;1 | Detail |
| C1H1g19883 | 1:28,173,278-28,177,088 | - | C2H1g22228 | CX1g003710 | LOC_Os01g54920 | Os01g0752800 | - | Detail |
| C1H1g05885 | 1:28,178,297-28,184,905 | - | C2H1g29792 | CX1g004059 | LOC_Os01g54930 | Os01g0753000 | OsVOZ1 | Detail |
| C1H1g21710 | 1:28,187,878-28,193,077 | + | C2H1g17930 | CX1g000869 | LOC_Os01g54940 | Os01g0753100 | - | Detail |
| C1H1g22929 | 1:28,193,865-28,196,051 | - | C2H1g29811 | CX1g006390 | LOC_Os01g54950 | Os01g0753150 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H11g20674 | 11:25,303,260-25,305,010 | - | C1H11g24803 | - | LOC_Os11g48030 | Os11g0707700 | - | Detail |
| C2H11g23789 | 11:25,308,395-25,309,441 | - | C1H11g24803 | CX11g012815 | LOC_Os11g48030 | Os11g0707700 | - | Detail |
| C2H11g18637 | 11:25,310,145-25,313,646 | + | C1H11g00342 | CX11g011522 | LOC_Os11g48040 | Os11g0707800 | OsUCP2 | Detail |
| C2H11g16826 | 11:25,322,422-25,325,285 | + | C1H11g07178 | CX11g014798 | LOC_Os11g48060 | Os11g0708100 | - | Detail |
| C2H11g30672 | 11:25,331,182-25,333,640 | + | C1H11g08651 | CX11g013159 | LOC_Os11g48070 | Os11g0708400 | - | Detail |
| C2H11g26751 | 11:25,335,956-25,336,894 | + | C1H10g01786 | CX11g012727 | LOC_Os11g48080 | Os11g0708500 | OsPDX1.3 | Detail |
| C2H11g05320 | 11:25,339,795-25,351,052 | - | C1H11g11341 | CX11g012342 | LOC_Os11g48090 | Os11g0708600 | - | Detail |
| C2H12g20675 | 12:22,652-23,719 | - | C1H12g21021 | CX12g015411 | - | - | - | Detail |
| C2H12g23164 | 12:27,770-28,455 | + | C1H12g08161 | CX12g017379 | - | - | - | Detail |
| C2H12g12006 | 12:28,960-31,581 | + | C1H12g08161 | CX12g015402 | - | - | - | Detail |
| C2H12g19296 | 12:36,886-47,626 | - | C1H12g25598 | CX12g017565 | - | - | - | Detail |
| C2H12g28928 | 12:48,907-50,400 | - | C1H11g11120 | CX12g016457 | LOC_Os11g01010 | Os11g0100100 | - | Detail |
| C2H12g27338 | 12:50,625-53,055 | + | C1H12g25928 | CX12g015584 | LOC_Os12g01010 | Os12g0100100 | - | Detail |
| C2H12g08992 | 12:53,444-56,416 | - | C1H12g18793 | CX12g015048 | LOC_Os12g01020 | Os12g0100200 | - | Detail |
| C2H12g02041 | 12:60,805-62,102 | - | C1H11g01849 | CX12g016135 | LOC_Os12g01030 | Os12g0100500 | - | Detail |
| C2H12g24638 | 12:63,827-65,591 | - | C1H11g20414 | CX11g013460 | - | - | - | Detail |
| C2H12g25359 | 12:80,010-86,692 | + | C1H12g18361 | CX12g016373 | LOC_Os12g01080 | Os11g0101200 | OsRpp30 | Detail |
| C2H12g22259 | 12:87,602-87,884 | + | C1H12g27411 | - | LOC_Os12g01090 | - | - | Detail |
| C2H12g02893 | 12:89,326-90,640 | + | C1H12g07544 | CX12g017682 | LOC_Os12g01100 | Os11g0101200 | OsRpp30 | Detail |
| C2H12g09125 | 12:114,841-115,452 | + | C1H11g18239 | CX12g018648 | LOC_Os12g01120 | Os12g0101600 | WOX3, OsWOX3, OsNS, OsPRS | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |