| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g19852 | 1:27,939,465-27,941,499 | - | C2H1g24369 | CX1g001202 | - | Os01g0748100 | - | Detail |
| C1H1g12110 | 1:27,942,290-27,943,113 | - | C2H1g28384 | CX1g001852 | LOC_Os01g54430 | Os01g0748150 | - | Detail |
| C1H1g06433 | 1:27,948,211-27,948,642 | - | C2H1g16377 | CX1g005907 | LOC_Os01g54450 | Os01g0748300 | - | Detail |
| C1H1g03873 | 1:27,948,741-27,950,840 | + | C2H1g07802 | - | - | - | - | Detail |
| C1H1g15001 | 1:27,952,506-27,953,451 | - | C2H1g01977 | - | LOC_Os01g54460 | - | - | Detail |
| C1H1g03729 | 1:27,957,384-27,958,925 | + | C2H1g03618 | CX1g003919 | LOC_Os01g54470 | Os01g0748500 | - | Detail |
| C1H1g31289 | 1:27,959,205-27,962,965 | - | C2H1g11065 | CX1g002998 | LOC_Os01g54480 | Os01g0748600 | - | Detail |
| C1H1g13303 | 1:27,969,333-27,971,498 | + | C2H1g14520 | CX1g004481 | LOC_Os01g54490 | Os01g0748800 | - | Detail |
| C1H1g07195 | 1:27,976,833-27,977,195 | + | C2H1g25503 | CX1g002648 | - | - | - | Detail |
| C1H1g04026 | 1:27,977,529-27,981,091 | + | C2H1g05314 | CX1g006043 | LOC_Os01g54510 | Os01g0748900 | - | Detail |
| C1H1g06199 | 1:27,984,884-27,986,890 | + | C2H1g08416 | CX1g005528 | LOC_Os01g54515 | Os01g0748950 | OsNPF4.5 | Detail |
| C1H1g21519 | 1:27,987,165-27,988,265 | + | C2H1g22814 | CX1g000885 | LOC_Os01g54520 | Os01g0749000 | - | Detail |
| C1H1g06931 | 1:27,989,241-27,991,698 | + | C2H1g20660 | CX1g004193 | LOC_Os01g54530 | Os01g0749100 | - | Detail |
| C1H1g02075 | 1:27,992,483-27,994,856 | + | C2H1g21635 | CX1g000277 | LOC_Os01g54540 | Os01g0749200 | WLP1, cp rpl13, cp RPL13 | Detail |
| C1H1g00896 | 1:27,995,734-27,997,984 | + | C2H1g02265 | CX1g005465 | LOC_Os01g54550 | Os01g0749300 | HSFA4A, OsHsfA4a, OsHsfA4b, OsHsf-04, HSFA4B, HSF04, OsHSF9, RHSF9, HSF9 | Detail |
| C1H1g09179 | 1:27,998,928-28,003,010 | - | C2H1g14114 | CX1g003457 | LOC_Os01g54560 | Os01g0749400 | - | Detail |
| C1H1g19262 | 1:28,019,377-28,024,544 | + | C2H1g10922 | CX1g003630 | LOC_Os01g54580 | Os01g0749900 | - | Detail |
| C1H1g17809 | 1:28,028,092-28,031,780 | + | C2H1g29233 | CX1g000465 | LOC_Os01g54590 | Os01g0750000 | - | Detail |
| C1H1g24495 | 1:28,034,434-28,036,116 | - | C2H1g09211 | CX1g004996 | LOC_Os01g54600 | Os01g0750100 | WRKY13, OsWRKY13 | Detail |
| C1H1g00277 | 1:28,045,281-28,050,980 | + | C2H1g25863 | CX1g006527 | LOC_Os01g54620 | Os01g0750300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H12g10280 | 12:11,498,917-11,500,868 | + | C1H12g15106 | CX12g016391 | LOC_Os12g23200 | Os12g0420400 | - | Detail |
| C2H12g01063 | 12:11,561,467-11,562,762 | + | C1H12g08853 | CX12g017123 | LOC_Os12g23280 | Os12g0421000 | - | Detail |
| C2H12g06749 | 12:11,583,035-11,584,229 | + | C1H12g09230 | CX12g015903 | LOC_Os12g23310 | Os12g0421300 | - | Detail |
| C2H12g04635 | 12:11,627,118-11,627,602 | - | C1H12g06645 | - | - | - | - | Detail |
| C2H12g13771 | 12:11,628,395-11,631,506 | - | C1H12g30597 | CX3g027805 | - | - | - | Detail |
| C2H12g11907 | 12:11,633,205-11,634,398 | + | C1H12g07677 | CX12g015513 | LOC_Os12g23670 | - | - | Detail |
| C2H12g10311 | 12:11,727,662-11,728,645 | + | C1H12g25023 | CX12g017134 | LOC_Os12g23700 | Os12g0424700 | OsCDKF;2 | Detail |
| C2H12g15775 | 12:11,774,354-11,781,890 | + | C1H12g03552 | CX12g018433 | LOC_Os12g23760 | Os12g0425600 | - | Detail |
| C2H12g03201 | 12:11,795,702-11,796,104 | + | C1H12g11675 | CX12g016330 | LOC_Os12g23820 | - | - | Detail |
| C2H12g08233 | 12:11,835,165-11,838,024 | + | C1H12g23241 | CX12g018205 | LOC_Os09g19790 | Os09g0362500 | - | Detail |
| C2H12g02754 | 12:11,840,410-11,842,795 | - | C1H12g26832 | CX12g017422 | LOC_Os12g23930 | Os12g0427000 | - | Detail |
| C2H12g18639 | 12:11,846,460-11,847,638 | + | C1H12g22336 | CX12g017255 | LOC_Os12g23940 | Os12g0427100 | - | Detail |
| C2H12g23524 | 12:11,853,859-11,854,962 | + | C1H12g28928 | CX12g016259 | LOC_Os12g23950 | Os12g0427450 | - | Detail |
| C2H12g05079 | 12:11,855,280-11,855,774 | - | C1H12g06272 | CX12g017870 | - | - | - | Detail |
| C2H12g28772 | 12:11,869,012-11,871,213 | - | C1H12g14938 | CX12g016199 | LOC_Os12g23980 | Os12g0427600 | OsSUB63 | Detail |
| C2H12g06293 | 12:11,894,763-11,896,832 | + | C1H12g17766 | CX12g017258 | - | Os12g0299650 | - | Detail |
| C2H12g03878 | 12:11,915,555-11,916,781 | + | C1H12g20606 | CX12g018431 | LOC_Os12g24020 | Os12g0428000 | - | Detail |
| C2H12g14327 | 12:11,926,534-11,932,506 | + | C1H12g06332 | CX12g018192 | - | Os12g0446700 | - | Detail |
| C2H12g20607 | 12:11,950,874-11,957,225 | + | C1H12g21550 | CX12g016209 | - | - | - | Detail |
| C2H12g16286 | 12:11,957,446-11,965,278 | + | C1H12g12526 | CX12g016209 | LOC_Os12g24080 | Os12g0428600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |