| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g07505 | 1:27,069,405-27,071,903 | - | C2H1g28242 | CX1g000027 | LOC_Os01g52680 | Os01g0726400 | MADS32, OsMADS32, CFO1, CFO1/OsMADS32, TRI1 | Detail |
| C1H1g17040 | 1:27,082,701-27,085,207 | + | C2H1g03941 | CX1g007145 | LOC_Os01g52690 | Os01g0726700 | - | Detail |
| C1H1g01057 | 1:27,098,025-27,102,587 | + | C2H1g23381 | CX1g003909 | LOC_Os01g52710 | Os01g0727100 | - | Detail |
| C1H1g19246 | 1:27,105,488-27,108,168 | + | C2H1g19647 | CX1g005872 | LOC_Os01g52720 | Os01g0727400 | - | Detail |
| C1H1g12496 | 1:27,113,567-27,114,853 | - | C2H1g27626 | CX1g003015 | LOC_Os01g52740 | Os01g0727600 | - | Detail |
| C1H1g13959 | 1:27,118,903-27,119,406 | - | C2H1g06165 | CX1g000031 | LOC_Os01g52750 | Os01g0727800 | - | Detail |
| C1H1g20367 | 1:27,119,512-27,121,598 | - | C2H1g06165 | CX1g000031 | LOC_Os01g52750 | Os01g0727800 | - | Detail |
| C1H1g10404 | 1:27,124,485-27,125,907 | - | C2H1g06165 | CX1g000031 | LOC_Os01g52750 | Os01g0727840 | - | Detail |
| C1H1g03195 | 1:27,128,417-27,129,954 | + | C2H1g10283 | CX1g000775 | LOC_Os01g52760 | Os01g0727900 | - | Detail |
| C1H1g13378 | 1:27,138,484-27,140,735 | + | C2H1g05247 | CX1g000699 | LOC_Os01g52770 | Os01g0728100 | - | Detail |
| C1H1g24144 | 1:27,140,932-27,142,061 | - | C2H1g01766 | CX1g005271 | LOC_Os01g52780 | Os01g0728150 | - | Detail |
| C1H1g11513 | 1:27,143,019-27,147,174 | - | C2H1g04992 | CX1g006621 | LOC_Os01g52780 | Os01g0728200 | - | Detail |
| C1H1g29225 | 1:27,149,280-27,153,310 | - | C2H1g21067 | CX1g001354 | LOC_Os01g52790 | Os01g0728300 | - | Detail |
| C1H1g27738 | 1:27,157,771-27,158,620 | - | C2H1g25878 | CX1g001403 | LOC_Os01g52830 | Os01g0728700 | - | Detail |
| C1H1g16764 | 1:27,162,572-27,165,978 | + | C2H1g00719 | CX1g004662 | LOC_Os01g52864 | Os01g0729100 | - | Detail |
| C1H1g29905 | 1:27,173,356-27,173,661 | - | C2H1g01846 | - | LOC_Os01g52890 | Os01g0729500 | - | Detail |
| C1H1g29198 | 1:27,173,986-27,175,929 | - | C2H1g01846 | CX1g001938 | LOC_Os01g52900 | Os01g0729600 | - | Detail |
| C1H1g12193 | 1:27,195,510-27,199,937 | + | C2H1g03641 | CX1g002816 | LOC_Os01g52920 | Os01g0729900 | - | Detail |
| C1H1g12702 | 1:27,201,699-27,203,286 | - | C2H1g19584 | CX1g001631 | LOC_Os01g52970 | Os01g0730100 | - | Detail |
| C1H1g06718 | 1:27,205,939-27,207,714 | - | C2H1g18512 | CX1g000876 | LOC_Os01g52980 | Os01g0730200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g25248 | 3:29,365,346-29,367,619 | - | C1H3g10204 | CX3g027698 | LOC_Os03g56370 | Os03g0775000 | - | Detail |
| C2H3g05048 | 3:29,371,454-29,375,985 | + | C1H3g14191 | CX3g026008 | LOC_Os03g56380 | Os03g0775200 | - | Detail |
| C2H3g23503 | 3:29,374,453-29,374,884 | - | - | - | - | Os03g0775250 | - | Detail |
| C2H3g23811 | 3:29,376,600-29,380,081 | + | C1H3g27485 | CX3g026938 | LOC_Os03g56390 | Os03g0775300 | - | Detail |
| C2H3g12716 | 3:29,380,413-29,382,824 | - | C1H3g13212 | CX3g030898 | LOC_Os03g56400 | Os03g0775400 | - | Detail |
| C2H3g27854 | 3:29,383,365-29,386,902 | + | C1H3g05680 | CX3g030889 | LOC_Os03g56410 | Os03g0775500 | - | Detail |
| C2H3g25642 | 3:29,395,401-29,398,122 | + | C1H3g30894 | CX3g030664 | LOC_Os03g56420 | Os03g0775600 | - | Detail |
| C2H3g18914 | 3:29,399,385-29,403,005 | + | C1H3g19822 | CX3g029071 | LOC_Os03g56430 | Os03g0775700 | - | Detail |
| C2H3g00007 | 3:29,412,826-29,414,241 | + | C1H3g04719 | CX3g026587 | LOC_Os03g56450 | Os03g0775900 | - | Detail |
| C2H3g28249 | 3:29,418,074-29,425,033 | + | C1H3g16991 | CX3g026064 | LOC_Os03g56460 | Os03g0776000 | - | Detail |
| C2H3g15730 | 3:29,425,373-29,427,891 | - | C1H3g04454 | CX3g028659 | LOC_Os03g56470 | Os03g0776100 | OsPERK4 | Detail |
| C2H3g19254 | 3:29,447,198-29,449,236 | + | C1H3g02970 | CX3g025698 | LOC_Os03g56540 | Os03g0776900 | - | Detail |
| C2H3g09900 | 3:29,461,207-29,462,985 | + | C1H3g04407 | CX3g029754 | LOC_Os03g56580 | Os03g0777000 | ONAC066 | Detail |
| C2H3g20066 | 3:29,464,687-29,467,678 | - | C1H3g14095 | CX3g026134 | LOC_Os03g56590 | Os03g0777100 | - | Detail |
| C2H3g09685 | 3:29,469,144-29,470,883 | - | C1H3g29609 | CX3g028274 | LOC_Os03g56610 | Os03g0777500 | - | Detail |
| C2H3g13878 | 3:29,476,702-29,479,338 | + | C1H3g10794 | CX3g026442 | LOC_Os03g56620 | Os03g0777600 | - | Detail |
| C2H3g10928 | 3:29,479,505-29,485,846 | - | C1H3g30679 | CX3g029819 | LOC_Os03g56630 | Os03g0777700 | - | Detail |
| C2H3g07763 | 3:29,491,830-29,499,002 | + | C1H3g05671 | CX3g031249 | LOC_Os03g56660 | Os03g0778000 | - | Detail |
| C2H3g24740 | 3:29,576,904-29,577,827 | - | C1H3g21633 | CX3g030337 | LOC_Os03g56730 | Os03g0779000 | - | Detail |
| C2H3g01525 | 3:29,588,873-29,589,732 | - | - | CX3g027209 | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |