| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g07505 | 1:27,069,405-27,071,903 | - | C2H1g28242 | CX1g000027 | LOC_Os01g52680 | Os01g0726400 | MADS32, OsMADS32, CFO1, CFO1/OsMADS32, TRI1 | Detail |
| C1H1g17040 | 1:27,082,701-27,085,207 | + | C2H1g03941 | CX1g007145 | LOC_Os01g52690 | Os01g0726700 | - | Detail |
| C1H1g01057 | 1:27,098,025-27,102,587 | + | C2H1g23381 | CX1g003909 | LOC_Os01g52710 | Os01g0727100 | - | Detail |
| C1H1g19246 | 1:27,105,488-27,108,168 | + | C2H1g19647 | CX1g005872 | LOC_Os01g52720 | Os01g0727400 | - | Detail |
| C1H1g12496 | 1:27,113,567-27,114,853 | - | C2H1g27626 | CX1g003015 | LOC_Os01g52740 | Os01g0727600 | - | Detail |
| C1H1g13959 | 1:27,118,903-27,119,406 | - | C2H1g06165 | CX1g000031 | LOC_Os01g52750 | Os01g0727800 | - | Detail |
| C1H1g20367 | 1:27,119,512-27,121,598 | - | C2H1g06165 | CX1g000031 | LOC_Os01g52750 | Os01g0727800 | - | Detail |
| C1H1g10404 | 1:27,124,485-27,125,907 | - | C2H1g06165 | CX1g000031 | LOC_Os01g52750 | Os01g0727840 | - | Detail |
| C1H1g03195 | 1:27,128,417-27,129,954 | + | C2H1g10283 | CX1g000775 | LOC_Os01g52760 | Os01g0727900 | - | Detail |
| C1H1g13378 | 1:27,138,484-27,140,735 | + | C2H1g05247 | CX1g000699 | LOC_Os01g52770 | Os01g0728100 | - | Detail |
| C1H1g24144 | 1:27,140,932-27,142,061 | - | C2H1g01766 | CX1g005271 | LOC_Os01g52780 | Os01g0728150 | - | Detail |
| C1H1g11513 | 1:27,143,019-27,147,174 | - | C2H1g04992 | CX1g006621 | LOC_Os01g52780 | Os01g0728200 | - | Detail |
| C1H1g29225 | 1:27,149,280-27,153,310 | - | C2H1g21067 | CX1g001354 | LOC_Os01g52790 | Os01g0728300 | - | Detail |
| C1H1g27738 | 1:27,157,771-27,158,620 | - | C2H1g25878 | CX1g001403 | LOC_Os01g52830 | Os01g0728700 | - | Detail |
| C1H1g16764 | 1:27,162,572-27,165,978 | + | C2H1g00719 | CX1g004662 | LOC_Os01g52864 | Os01g0729100 | - | Detail |
| C1H1g29905 | 1:27,173,356-27,173,661 | - | C2H1g01846 | - | LOC_Os01g52890 | Os01g0729500 | - | Detail |
| C1H1g29198 | 1:27,173,986-27,175,929 | - | C2H1g01846 | CX1g001938 | LOC_Os01g52900 | Os01g0729600 | - | Detail |
| C1H1g12193 | 1:27,195,510-27,199,937 | + | C2H1g03641 | CX1g002816 | LOC_Os01g52920 | Os01g0729900 | - | Detail |
| C1H1g12702 | 1:27,201,699-27,203,286 | - | C2H1g19584 | CX1g001631 | LOC_Os01g52970 | Os01g0730100 | - | Detail |
| C1H1g06718 | 1:27,205,939-27,207,714 | - | C2H1g18512 | CX1g000876 | LOC_Os01g52980 | Os01g0730200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g30555 | 3:9,896,401-9,897,018 | + | C1H3g30348 | CX3g030611 | LOC_Os03g19780 | Os03g0311600 | - | Detail |
| C2H3g20097 | 3:9,924,788-9,936,112 | + | C1H3g27309 | CX3g025645 | LOC_Os03g19870 | Os03g0312600 | - | Detail |
| C2H3g03722 | 3:9,927,638-9,929,795 | - | C1H3g28649 | CX3g026953 | LOC_Os03g19840 | Os03g0312300 | - | Detail |
| C2H3g16430 | 3:9,939,947-9,942,748 | + | C1H3g17775 | CX3g029208 | LOC_Os03g19890 | Os03g0313000 | - | Detail |
| C2H3g25727 | 3:9,943,750-9,946,030 | - | C1H3g19322 | CX3g025344 | LOC_Os03g19900 | Os03g0313100 | - | Detail |
| C2H3g16070 | 3:9,962,482-9,967,523 | - | C1H3g29669 | CX3g026685 | LOC_Os03g19920 | Os03g0313300 | - | Detail |
| C2H3g06268 | 3:9,972,081-9,976,053 | + | C1H3g10646 | CX3g029276 | LOC_Os03g19930 | Os03g0313600 | - | Detail |
| C2H3g30521 | 3:9,980,242-9,980,544 | - | C1H3g19201 | CX3g031341 | LOC_Os03g19940 | Os03g0313800 | - | Detail |
| C2H3g00659 | 3:9,985,452-9,989,194 | + | C1H3g16128 | CX3g028576 | LOC_Os03g19960 | Os03g0314100 | - | Detail |
| C2H3g06742 | 3:9,989,624-9,994,926 | - | C1H3g20812 | CX3g025949 | LOC_Os03g19970 | Os03g0314200 | - | Detail |
| C2H3g04215 | 3:9,999,494-10,001,440 | + | C1H3g05706 | CX3g028739 | LOC_Os03g19980 | Os03g0314400 | - | Detail |
| C2H3g25214 | 3:10,012,256-10,015,341 | + | C1H3g20485 | CX3g029467 | LOC_Os03g19990 | Os03g0314500 | - | Detail |
| C2H3g21031 | 3:10,019,797-10,021,050 | + | C1H3g18195 | CX3g027957 | LOC_Os03g20010 | Os03g0314700 | - | Detail |
| C2H3g01699 | 3:10,024,031-10,024,813 | + | C1H3g02376 | CX3g027957 | - | - | - | Detail |
| C2H3g06553 | 3:10,032,472-10,037,012 | - | C1H3g19914 | CX3g027685 | LOC_Os03g20020 | Os03g0314800 | OsNIN1 | Detail |
| C2H3g07740 | 3:10,039,607-10,041,751 | + | C1H3g29631 | CX3g026874 | - | - | - | Detail |
| C2H3g15105 | 3:10,054,718-10,056,834 | - | C1H3g14664 | CX3g029724 | LOC_Os03g20090 | Os03g0315400 | OsMYB2 | Detail |
| C2H3g14730 | 3:10,079,852-10,084,190 | - | C1H3g20197 | CX3g031333 | LOC_Os03g20100 | Os03g0315800 | ASL4 | Detail |
| C2H3g02965 | 3:10,095,893-10,097,578 | + | C1H3g21365 | CX3g026763 | LOC_Os03g20120 | Os03g0316200 | OsGolS1 | Detail |
| C2H3g20528 | 3:10,108,363-10,111,015 | + | C1H3g25401 | CX3g027966 | LOC_Os03g20170 | Os03g0316900 | OsABCI16 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |