| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g27777 | 1:26,903,577-26,904,881 | + | C2H1g14542 | CX1g000877 | LOC_Os01g52380 | Os01g0721800 | - | Detail |
| C1H1g16429 | 1:26,907,034-26,909,887 | - | C2H1g03938 | CX1g001695 | LOC_Os01g52390 | Os01g0721900 | - | Detail |
| C1H1g19540 | 1:26,913,451-26,917,004 | + | C2H1g29212 | CX1g005554 | LOC_Os01g52400 | Os01g0722100 | - | Detail |
| C1H1g14417 | 1:26,925,623-26,927,295 | + | C2H1g15644 | CX1g004391 | LOC_Os01g52410 | Os01g0722300 | Os2R_MYB14 | Detail |
| C1H1g17552 | 1:26,938,467-26,942,242 | + | C2H1g14945 | CX1g002677 | LOC_Os01g52450 | Os01g0722700 | OsHXK9 | Detail |
| C1H1g17968 | 1:26,946,286-26,949,083 | - | C2H1g16107 | CX1g001570 | LOC_Os01g52470 | Os01g0723000 | - | Detail |
| C1H1g22223 | 1:26,951,203-26,952,076 | + | C2H1g09375 | CX1g004088 | LOC_Os01g52480 | Os01g0723100 | - | Detail |
| C1H1g00329 | 1:26,952,184-26,952,905 | + | C2H1g00796 | CX1g004088 | LOC_Os01g52480 | Os01g0723100 | - | Detail |
| C1H1g27397 | 1:26,953,685-26,955,175 | - | C2H1g00282 | CX1g004240 | LOC_Os01g52490 | Os01g0723200 | - | Detail |
| C1H1g18013 | 1:26,962,480-26,968,150 | + | C2H1g25823 | CX1g001850 | LOC_Os01g52500 | Os01g0723400 | NADP-ME2, Os-NADP-ME2, Os-NADP-ME2-2 | Detail |
| C1H1g17264 | 1:26,969,834-26,975,477 | + | C2H1g08871 | CX1g003519 | LOC_Os01g52514 | Os01g0723500 | - | Detail |
| C1H1g03740 | 1:26,976,986-26,981,316 | + | C2H1g17638 | CX1g004209 | LOC_Os01g52530 | Os01g0723600 | - | Detail |
| C1H1g09315 | 1:26,983,980-26,987,890 | + | C2H1g22241 | CX1g004680 | LOC_Os01g52540 | Os01g0723700 | - | Detail |
| C1H1g17060 | 1:26,988,103-26,994,535 | - | C2H1g23039 | CX1g004575 | LOC_Os01g52550 | Os01g0723800 | - | Detail |
| C1H1g18463 | 1:27,012,831-27,022,129 | + | C2H1g05862 | CX1g004747 | LOC_Os01g52560 | Os01g0724500 | - | Detail |
| C1H1g09116 | 1:27,038,700-27,046,564 | + | C2H1g26023 | CX1g002347 | LOC_Os01g52610 | Os01g0725400 | - | Detail |
| C1H1g01881 | 1:27,047,370-27,050,594 | + | C2H1g19762 | CX1g003740 | LOC_Os01g52630 | Os01g0725600 | - | Detail |
| C1H1g28016 | 1:27,055,008-27,060,104 | + | C2H1g12468 | CX1g000922 | LOC_Os01g52640 | Os01g0725800 | - | Detail |
| C1H1g01009 | 1:27,060,442-27,061,041 | - | C2H1g25269 | CX1g004829 | LOC_Os01g52650 | Os01g0725900 | - | Detail |
| C1H1g26602 | 1:27,063,887-27,064,616 | - | C2H1g28455 | CX1g001737 | LOC_Os01g52660 | Os01g0726100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g05621 | 3:9,712,031-9,720,342 | - | C1H3g03825 | CX3g025603 | LOC_Os03g19520 | Os03g0308200 | - | Detail |
| C2H3g16168 | 3:9,723,083-9,730,570 | + | C1H3g14624 | CX3g025218 | LOC_Os03g19530 | Os03g0308500 | - | Detail |
| C2H3g22628 | 3:9,731,143-9,731,921 | + | C1H3g25260 | CX3g025445 | LOC_Os03g19540 | Os03g0308600 | - | Detail |
| C2H3g07392 | 3:9,732,772-9,734,508 | + | C1H3g01414 | CX3g025445 | LOC_Os03g19550 | Os03g0308700 | - | Detail |
| C2H3g00056 | 3:9,735,156-9,740,043 | - | C1H3g19377 | CX3g030908 | LOC_Os03g19560 | Os03g0308800 | - | Detail |
| C2H3g29613 | 3:9,740,992-9,749,186 | - | C1H3g11990 | CX3g028131 | LOC_Os03g19570 | Os03g0308900 | - | Detail |
| C2H3g04332 | 3:9,750,097-9,754,649 | - | C1H3g12362 | CX3g027111 | LOC_Os03g19580 | Os03g0309000 | - | Detail |
| C2H3g27208 | 3:9,762,776-9,770,706 | + | C1H3g01579 | CX3g027710 | LOC_Os03g19590 | Os03g0309200 | PHYB, phyB | Detail |
| C2H3g30389 | 3:9,779,473-9,780,894 | + | C1H3g31344 | - | - | - | - | Detail |
| C2H3g16987 | 3:9,782,100-9,783,703 | - | C1H3g14051 | CX3g026554 | LOC_Os03g19610 | Os03g0309400 | OsPME1 | Detail |
| C2H3g26228 | 3:9,816,316-9,816,658 | + | C1H3g18443 | CX3g028408 | LOC_Os03g19640 | Os03g0252100 | DIP12, OsDIP12 | Detail |
| C2H3g16697 | 3:9,820,592-9,820,813 | + | C1H3g11555 | CX3g028766 | - | - | - | Detail |
| C2H3g13080 | 3:9,821,755-9,821,967 | - | C1H3g03110 | - | - | - | - | Detail |
| C2H3g12766 | 3:9,822,694-9,826,576 | + | C1H3g27332 | CX3g028595 | LOC_Os03g19650 | Os03g0309800 | - | Detail |
| C2H3g11631 | 3:9,833,897-9,835,850 | + | C1H3g10972 | CX3g030795 | LOC_Os03g19670 | Os03g0310000 | - | Detail |
| C2H3g08022 | 3:9,838,873-9,840,653 | + | C1H3g01286 | CX3g026374 | LOC_Os03g19680 | Os03g0310400 | - | Detail |
| C2H3g15288 | 3:9,841,884-9,850,957 | + | C1H3g04682 | CX3g030825 | LOC_Os03g19690 | Os03g0310500 | - | Detail |
| C2H3g22353 | 3:9,851,698-9,852,960 | - | C1H3g07093 | CX3g025321 | LOC_Os03g19700 | Os03g0310600 | - | Detail |
| C2H3g16003 | 3:9,862,102-9,862,623 | + | C1H3g20690 | CX3g025589 | LOC_Os03g19720 | Os03g0310800 | - | Detail |
| C2H3g12709 | 3:9,869,680-9,885,448 | + | C1H3g23036 | CX3g026836 | LOC_Os03g19760 | Os03g0311300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |