| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H7g06281 | 7:2,870,934-2,884,230 | - | C2H7g15677 | CX7g049022 | LOC_Os07g06890 | Os07g0163000 | OsD-LDH, D-LDH, OsD-LDH-Tr | Detail |
| C1H7g10831 | 7:2,883,733-2,884,255 | + | - | - | - | Os07g0163066 | - | Detail |
| C1H7g03136 | 7:2,887,002-2,889,311 | - | C2H7g11414 | CX7g046953 | LOC_Os07g06900 | Os07g0163200 | - | Detail |
| C1H7g06104 | 7:2,892,038-2,893,416 | - | C2H7g28250 | CX7g050145 | LOC_Os07g06910 | - | - | Detail |
| C1H7g10635 | 7:2,906,228-2,918,414 | + | C2H7g28897 | CX7g047813 | LOC_Os07g06940 | Os07g0163500 | WP1, OsValRS2, ValRS2 | Detail |
| C1H7g30562 | 7:2,926,314-2,938,047 | + | C2H7g16342 | CX7g047695 | LOC_Os07g06950 | Os07g0163800 | - | Detail |
| C1H7g13389 | 7:2,942,767-2,948,162 | - | C2H7g12803 | CX7g046501 | LOC_Os07g06970 | Os07g0164000 | WAF1, waf1, waf1-1, waf1-2, HEN1 | Detail |
| C1H7g24937 | 7:2,949,503-2,958,519 | - | C2H7g02116 | CX7g046855 | LOC_Os07g06980 | Os07g0164100 | HDA704 | Detail |
| C1H7g12322 | 7:2,958,769-2,959,858 | + | C2H7g16406 | CX7g048709 | LOC_Os07g06990 | Os07g0164200 | - | Detail |
| C1H7g16672 | 7:2,959,938-2,963,936 | - | C2H7g19812 | CX7g048627 | LOC_Os07g07000 | Os07g0164300 | OsSYP131a | Detail |
| C1H7g03242 | 7:2,966,683-2,969,912 | + | C2H7g13004 | CX7g047735 | LOC_Os07g07010 | Os07g0164500 | - | Detail |
| C1H7g21914 | 7:2,972,390-2,973,941 | + | C2H7g29770 | CX7g048909 | LOC_Os07g07020 | Os07g0164600 | - | Detail |
| C1H7g10253 | 7:2,979,263-2,981,271 | + | C2H7g22158 | CX7g050369 | LOC_Os07g07040 | Os07g0164800 | - | Detail |
| C1H7g18807 | 7:2,982,037-2,989,129 | - | C2H7g29990 | CX7g048267 | LOC_Os07g07050 | Os07g0164900 | - | Detail |
| C1H7g00647 | 7:2,991,445-2,995,951 | + | C2H7g08797 | CX7g048340 | LOC_Os07g07060 | Os07g0165000 | - | Detail |
| C1H7g27659 | 7:2,996,482-2,999,586 | - | C2H7g24346 | CX7g049088 | LOC_Os07g07070 | Os07g0165100 | - | Detail |
| C1H7g00683 | 7:3,002,443-3,009,769 | - | C2H7g29244 | CX7g049607 | LOC_Os07g07080 | Os07g0165200 | - | Detail |
| C1H7g28591 | 7:3,018,602-3,020,127 | + | - | - | LOC_Os07g07094 | Os07g0165300 | - | Detail |
| C1H7g18135 | 7:3,021,815-3,023,696 | - | - | - | LOC_Os07g07150 | Os07g0165700 | - | Detail |
| C1H7g08593 | 7:3,045,478-3,046,564 | + | C2H7g28487 | CX7g046732 | LOC_Os07g07170 | Os07g0165900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g28117 | 3:1,639,987-1,647,079 | - | C1H3g14010 | CX3g028134 | LOC_Os03g04130 | Os03g0133800 | - | Detail |
| C2H3g06102 | 3:1,648,125-1,648,348 | - | C1H3g08215 | - | - | Os03g0130350 | - | Detail |
| C2H3g18012 | 3:1,648,629-1,653,167 | - | C1H3g28278 | CX3g028998 | LOC_Os03g04140 | Os03g0133900 | OsSAT3 | Detail |
| C2H3g09036 | 3:1,656,377-1,660,724 | + | C1H3g03246 | CX3g030226 | LOC_Os03g04169 | Os03g0134300 | - | Detail |
| C2H3g27438 | 3:1,661,426-1,663,407 | - | C1H3g21430 | CX3g030747 | LOC_Os03g04190 | Os03g0134500 | - | Detail |
| C2H3g10429 | 3:1,672,325-1,673,484 | + | C1H3g13462 | CX3g028092 | - | - | - | Detail |
| C2H3g12826 | 3:1,674,701-1,675,697 | + | C1H3g21849 | CX3g028352 | LOC_Os03g04210 | Os03g0134800 | - | Detail |
| C2H3g04770 | 3:1,676,236-1,677,702 | - | C1H3g16924 | CX3g027728 | LOC_Os03g04220 | Os03g0134900 | - | Detail |
| C2H3g23886 | 3:1,682,511-1,683,738 | - | C1H3g04141 | CX3g027728 | LOC_Os03g04240 | Os03g0135100 | - | Detail |
| C2H3g23080 | 3:1,685,909-1,686,757 | - | C1H3g09964 | CX3g027728 | LOC_Os03g04250 | Os03g0135200 | - | Detail |
| C2H3g08307 | 3:1,688,274-1,689,226 | - | C1H3g28981 | CX3g027728 | LOC_Os03g04260 | Os03g0135300 | - | Detail |
| C2H3g10421 | 3:1,691,314-1,694,206 | - | C1H3g07565 | CX3g030799 | LOC_Os03g04270 | Os03g0135400 | - | Detail |
| C2H3g21011 | 3:1,699,799-1,708,585 | - | C1H3g05387 | CX3g025620 | LOC_Os03g04300 | Os03g0135600 | - | Detail |
| C2H3g13535 | 3:1,712,626-1,714,592 | - | C1H3g28124 | CX3g028533 | LOC_Os03g04310 | Os03g0135700 | - | Detail |
| C2H3g10458 | 3:1,720,804-1,721,652 | - | C1H3g13645 | - | LOC_Os03g04320 | Os03g0135800 | - | Detail |
| C2H3g08967 | 3:1,732,809-1,733,900 | + | C1H3g26367 | CX3g028470 | LOC_Os03g04340 | Os03g0136200 | - | Detail |
| C2H3g15188 | 3:1,740,919-1,742,499 | - | C1H3g15385 | CX3g025886 | LOC_Os03g04360 | Os03g0136400 | OsPHT1;7 | Detail |
| C2H3g08585 | 3:1,743,266-1,743,688 | + | C1H3g19324 | - | LOC_Os03g04370 | Os03g0136500 | - | Detail |
| C2H3g18976 | 3:1,744,041-1,744,523 | + | C1H3g07268 | CX3g030982 | LOC_Os03g04380 | Os03g0136600 | - | Detail |
| C2H3g17961 | 3:1,745,089-1,747,437 | - | C1H3g01856 | CX3g031134 | LOC_Os03g04390 | Os03g0136700 | OsPGL3A | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |