| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H6g07621 | 6:25,624,495-25,625,931 | + | C2H6g00488 | CX6g043244 | LOC_Os06g48660 | Os06g0700100 | - | Detail |
| C1H6g24118 | 6:25,629,678-25,630,259 | - | - | CX6g045422 | LOC_Os06g48680 | Os06g0700300 | - | Detail |
| C1H6g06713 | 6:25,648,527-25,651,640 | - | C2H6g20696 | CX6g043150 | LOC_Os06g48700 | Os06g0700500 | - | Detail |
| C1H6g22333 | 6:25,655,404-25,663,268 | - | C2H6g06236 | CX6g042222 | LOC_Os06g48720 | Os06g0700700 | HMA2, OsHMA2, osHMA2 | Detail |
| C1H6g22780 | 6:25,656,163-25,656,759 | + | - | CX6g042407 | - | Os06g0700550 | - | Detail |
| C1H6g21711 | 6:25,696,178-25,699,613 | - | C2H6g28660 | CX6g044182 | LOC_Os06g48750 | Os06g0701100 | - | Detail |
| C1H6g30062 | 6:25,701,519-25,708,262 | - | C2H6g21072 | CX6g042449 | LOC_Os06g48760 | Os06g0701200 | - | Detail |
| C1H6g30249 | 6:25,708,835-25,716,523 | - | C2H6g10219 | CX6g041951 | LOC_Os06g48770 | Os06g0701300 | - | Detail |
| C1H6g22709 | 6:25,722,228-25,723,457 | - | C2H6g25221 | CX6g042380 | LOC_Os06g48780 | Os06g0701400 | - | Detail |
| C1H6g30798 | 6:25,727,529-25,730,246 | + | C2H6g12207 | CX6g042431 | LOC_Os06g48790 | - | - | Detail |
| C1H6g22238 | 6:25,731,730-25,733,451 | - | C2H6g29564 | CX6g044354 | LOC_Os06g48800 | Os06g0701600 | OsHKT2;4, OsHKT9 | Detail |
| C1H6g25250 | 6:25,744,535-25,746,451 | - | C2H6g13374 | CX6g044354 | LOC_Os06g48810 | Os06g0701700 | - | Detail |
| C1H6g03679 | 6:25,798,323-25,798,721 | + | C2H6g10307 | CX6g045889 | LOC_Os06g48850 | Os06g0701900 | OsSAUR27 | Detail |
| C1H6g20549 | 6:25,800,838-25,801,272 | - | C2H6g07274 | CX6g041384 | LOC_Os06g48860 | Os06g0702000 | - | Detail |
| C1H6g03943 | 6:25,812,462-25,815,888 | + | C2H6g14535 | CX6g045144 | LOC_Os06g48870 | Os06g0702100 | - | Detail |
| C1H6g29012 | 6:25,822,808-25,824,711 | - | - | CX6g043002 | LOC_Os06g48880 | Os06g0702200 | - | Detail |
| C1H6g13761 | 6:25,831,450-25,839,557 | + | C2H6g11925 | CX6g043833 | LOC_Os06g48940 | Os06g0702500 | - | Detail |
| C1H6g08040 | 6:25,862,052-25,870,217 | + | C2H6g09619 | CX6g042776 | LOC_Os06g48950 | Os06g0702600 | ARF7A, OsARF7a, OsARF19 | Detail |
| C1H6g18606 | 6:25,870,627-25,872,385 | - | C2H6g06313 | CX6g044368 | LOC_Os06g48960 | Os06g0702700 | - | Detail |
| C1H6g07052 | 6:25,874,807-25,877,957 | + | C2H6g28533 | CX6g045073 | LOC_Os06g48970 | Os06g0702800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g03359 | 3:5,792,932-5,793,630 | + | C1H3g23318 | CX3g025280 | LOC_Os03g12440 | - | - | Detail |
| C2H3g24748 | 3:5,794,954-5,802,619 | + | C1H3g17135 | CX3g030046 | LOC_Os03g12450 | Os03g0225500 | - | Detail |
| C2H3g09129 | 3:5,803,343-5,810,016 | + | C1H3g25680 | CX3g028144 | LOC_Os03g12460 | Os03g0225600 | - | Detail |
| C2H3g02566 | 3:5,811,449-5,816,438 | + | C1H3g10808 | CX3g025098 | LOC_Os03g12470 | Os03g0225700 | WAK25, OsWAK25 | Detail |
| C2H3g16646 | 3:5,821,016-5,822,452 | + | C1H3g31142 | CX3g026072 | LOC_Os03g12500 | Os03g0225900 | - | Detail |
| C2H3g10692 | 3:5,829,270-5,830,121 | - | C1H3g02465 | CX3g026153 | LOC_Os03g12510 | Os03g0226200 | Hb2, OsPgb1.2 | Detail |
| C2H3g15869 | 3:5,831,583-5,833,279 | + | C1H3g31559 | CX3g028573 | LOC_Os03g12520 | Os03g0226300 | - | Detail |
| C2H3g08794 | 3:5,833,428-5,834,000 | + | C1H3g14266 | CX3g028573 | LOC_Os03g12520 | Os03g0226300 | - | Detail |
| C2H3g29082 | 3:5,839,492-5,844,120 | + | C1H3g15877 | CX3g027606 | LOC_Os03g12530 | Os03g0226400 | - | Detail |
| C2H3g13286 | 3:5,850,353-5,857,091 | + | C1H3g27940 | CX3g025975 | LOC_Os03g12550 | Os03g0226600 | - | Detail |
| C2H3g30568 | 3:5,857,943-5,859,735 | - | C1H3g15687 | CX3g027982 | LOC_Os03g12560 | Os03g0226700 | - | Detail |
| C2H3g00790 | 3:5,860,981-5,866,764 | + | C1H3g18854 | CX3g024984 | LOC_Os03g12570 | Os03g0226800 | CMT3b | Detail |
| C2H3g22427 | 3:5,867,922-5,870,733 | + | C1H3g26728 | CX3g027871 | LOC_Os03g12570 | Os03g0226901 | - | Detail |
| C2H3g07335 | 3:5,873,669-5,881,089 | + | C1H3g26232 | CX3g030829 | LOC_Os03g12590 | Os03g0227000 | - | Detail |
| C2H3g16667 | 3:5,883,692-5,891,668 | + | C1H3g22048 | CX3g026050 | LOC_Os03g12610 | Os03g0227300 | - | Detail |
| C2H3g04602 | 3:5,891,978-5,893,629 | - | C1H3g19915 | CX3g031339 | LOC_Os03g12620 | Os03g0227400 | - | Detail |
| C2H3g27028 | 3:5,903,063-5,906,526 | + | C1H3g13701 | CX3g027265 | LOC_Os03g12630 | Os03g0227500 | - | Detail |
| C2H3g25912 | 3:5,922,820-5,929,627 | + | C1H3g10637 | CX3g027504 | LOC_Os03g12660 | Os03g0227700 | OsDWF4, OsDWARF4, CYP90B2 | Detail |
| C2H3g15726 | 3:5,931,799-5,936,573 | + | C1H3g00645 | CX3g025096 | LOC_Os03g12670 | Os03g0141200 | OsBMY4 | Detail |
| C2H3g08529 | 3:5,935,003-5,936,506 | - | - | CX3g029136 | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |