| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H6g07621 | 6:25,624,495-25,625,931 | + | C2H6g00488 | CX6g043244 | LOC_Os06g48660 | Os06g0700100 | - | Detail |
| C1H6g24118 | 6:25,629,678-25,630,259 | - | - | CX6g045422 | LOC_Os06g48680 | Os06g0700300 | - | Detail |
| C1H6g06713 | 6:25,648,527-25,651,640 | - | C2H6g20696 | CX6g043150 | LOC_Os06g48700 | Os06g0700500 | - | Detail |
| C1H6g22333 | 6:25,655,404-25,663,268 | - | C2H6g06236 | CX6g042222 | LOC_Os06g48720 | Os06g0700700 | HMA2, OsHMA2, osHMA2 | Detail |
| C1H6g22780 | 6:25,656,163-25,656,759 | + | - | CX6g042407 | - | Os06g0700550 | - | Detail |
| C1H6g21711 | 6:25,696,178-25,699,613 | - | C2H6g28660 | CX6g044182 | LOC_Os06g48750 | Os06g0701100 | - | Detail |
| C1H6g30062 | 6:25,701,519-25,708,262 | - | C2H6g21072 | CX6g042449 | LOC_Os06g48760 | Os06g0701200 | - | Detail |
| C1H6g30249 | 6:25,708,835-25,716,523 | - | C2H6g10219 | CX6g041951 | LOC_Os06g48770 | Os06g0701300 | - | Detail |
| C1H6g22709 | 6:25,722,228-25,723,457 | - | C2H6g25221 | CX6g042380 | LOC_Os06g48780 | Os06g0701400 | - | Detail |
| C1H6g30798 | 6:25,727,529-25,730,246 | + | C2H6g12207 | CX6g042431 | LOC_Os06g48790 | - | - | Detail |
| C1H6g22238 | 6:25,731,730-25,733,451 | - | C2H6g29564 | CX6g044354 | LOC_Os06g48800 | Os06g0701600 | OsHKT2;4, OsHKT9 | Detail |
| C1H6g25250 | 6:25,744,535-25,746,451 | - | C2H6g13374 | CX6g044354 | LOC_Os06g48810 | Os06g0701700 | - | Detail |
| C1H6g03679 | 6:25,798,323-25,798,721 | + | C2H6g10307 | CX6g045889 | LOC_Os06g48850 | Os06g0701900 | OsSAUR27 | Detail |
| C1H6g20549 | 6:25,800,838-25,801,272 | - | C2H6g07274 | CX6g041384 | LOC_Os06g48860 | Os06g0702000 | - | Detail |
| C1H6g03943 | 6:25,812,462-25,815,888 | + | C2H6g14535 | CX6g045144 | LOC_Os06g48870 | Os06g0702100 | - | Detail |
| C1H6g29012 | 6:25,822,808-25,824,711 | - | - | CX6g043002 | LOC_Os06g48880 | Os06g0702200 | - | Detail |
| C1H6g13761 | 6:25,831,450-25,839,557 | + | C2H6g11925 | CX6g043833 | LOC_Os06g48940 | Os06g0702500 | - | Detail |
| C1H6g08040 | 6:25,862,052-25,870,217 | + | C2H6g09619 | CX6g042776 | LOC_Os06g48950 | Os06g0702600 | ARF7A, OsARF7a, OsARF19 | Detail |
| C1H6g18606 | 6:25,870,627-25,872,385 | - | C2H6g06313 | CX6g044368 | LOC_Os06g48960 | Os06g0702700 | - | Detail |
| C1H6g07052 | 6:25,874,807-25,877,957 | + | C2H6g28533 | CX6g045073 | LOC_Os06g48970 | Os06g0702800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g03816 | 1:24,817,159-24,833,117 | - | C1H1g22731 | CX1g004904 | LOC_Os01g48680 | Os01g0678500 | TPC1, OsTPC1, Tpc1, OsCC1 | Detail |
| C2H1g17432 | 1:24,834,344-24,836,347 | + | C1H1g06484 | CX1g001832 | LOC_Os01g48690 | Os01g0678600 | - | Detail |
| C2H1g29587 | 1:24,837,207-24,840,189 | - | C1H1g21202 | CX1g005378 | LOC_Os01g48700 | Os01g0678700 | - | Detail |
| C2H1g22453 | 1:24,843,096-24,846,556 | + | C1H1g29809 | CX1g000800 | - | - | - | Detail |
| C2H1g18621 | 1:24,848,468-24,849,100 | - | C1H1g09148 | CX1g006182 | LOC_Os01g48710 | Os01g0678800 | - | Detail |
| C2H1g02873 | 1:24,857,342-24,865,949 | + | C1H1g01369 | CX1g006519 | LOC_Os01g48720 | Os01g0679000 | - | Detail |
| C2H1g10975 | 1:24,874,515-24,879,080 | + | C1H1g09308 | CX1g004313 | LOC_Os01g48750 | Os01g0679550 | - | Detail |
| C2H1g25010 | 1:24,880,657-24,884,018 | + | C1H1g00895 | CX1g003619 | LOC_Os01g48760 | Os01g0679600 | - | Detail |
| C2H1g04367 | 1:24,884,811-24,887,061 | - | - | CX1g000487 | LOC_Os01g48770 | Os01g0679700 | - | Detail |
| C2H1g01242 | 1:24,898,075-24,904,856 | + | C1H1g15404 | CX1g003718 | LOC_Os01g48790 | Os01g0679900 | - | Detail |
| C2H1g04425 | 1:24,898,169-24,898,621 | - | - | - | - | Os01g0680000 | - | Detail |
| C2H1g18628 | 1:24,914,327-24,915,487 | + | C1H1g14743 | CX1g004327 | LOC_Os01g48800 | Os01g0680200 | OsPUP4, BG3/OsPUP4, BG3 | Detail |
| C2H1g11263 | 1:24,914,489-24,915,503 | - | - | - | - | Os01g0680100 | - | Detail |
| C2H1g09841 | 1:24,929,361-24,932,397 | + | C1H1g08166 | CX1g006918 | LOC_Os01g48810 | Os01g0680400 | - | Detail |
| C2H1g14175 | 1:24,937,054-24,937,968 | + | C1H1g07424 | CX1g002655 | LOC_Os01g48820 | Os01g0680600 | - | Detail |
| C2H1g22016 | 1:24,941,731-24,946,829 | - | C1H1g15834 | CX1g002522 | LOC_Os01g48830 | Os01g0680700 | - | Detail |
| C2H1g19155 | 1:24,955,834-24,959,326 | + | - | - | - | Os01g0680950 | - | Detail |
| C2H1g29263 | 1:24,956,786-24,959,385 | - | C1H1g17992 | CX1g007143 | LOC_Os01g48850 | Os01g0680900 | - | Detail |
| C2H1g05013 | 1:24,961,070-24,966,730 | - | C1H1g20689 | CX1g002388 | LOC_Os01g48874 | Os01g0681000 | - | Detail |
| C2H1g04783 | 1:24,969,619-24,970,164 | + | - | CX6g041804 | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |