| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g11882 | 1:25,967,718-25,975,130 | + | C2H1g19625 | CX1g006280 | LOC_Os01g50690 | Os01g0702400 | - | Detail |
| C1H1g16231 | 1:25,975,773-25,979,083 | + | C2H1g05807 | CX1g001215 | LOC_Os01g50700 | Os01g0702450 | - | Detail |
| C1H1g10897 | 1:25,979,669-25,980,429 | + | C2H1g11044 | - | LOC_Os01g50700 | Os01g0702500 | - | Detail |
| C1H1g25352 | 1:25,981,604-25,982,258 | + | - | - | - | - | - | Detail |
| C1H1g24141 | 1:25,988,767-25,990,347 | - | C2H1g04286 | CX1g002995 | LOC_Os01g50720 | Os01g0702700 | Os2R_MYB12, JAdMYB1 | Detail |
| C1H1g18010 | 1:26,006,387-26,008,459 | + | C2H1g09112 | CX1g002161 | LOC_Os01g50750 | Os01g0703300 | - | Detail |
| C1H1g02622 | 1:26,017,494-26,021,829 | + | C2H1g03589 | CX1g001207 | LOC_Os01g50760 | Os01g0703400 | OsFPS1, FPPS | Detail |
| C1H1g25322 | 1:26,024,945-26,028,990 | + | C2H1g19007 | CX1g001914 | LOC_Os01g50770 | Os01g0703600 | - | Detail |
| C1H1g14210 | 1:26,033,731-26,034,478 | - | C2H1g22277 | CX1g002500 | LOC_Os01g50810 | Os01g0704000 | OsPMEI4 | Detail |
| C1H1g12969 | 1:26,050,436-26,053,018 | + | C2H1g22213 | CX1g004065 | LOC_Os01g50830 | Os01g0704200 | - | Detail |
| C1H1g06033 | 1:26,100,563-26,104,736 | + | C2H1g12065 | CX1g006371 | LOC_Os01g50860 | Os01g0704700 | - | Detail |
| C1H1g04301 | 1:26,106,096-26,106,407 | - | C2H1g05967 | - | LOC_Os01g50870 | Os01g0174100 | - | Detail |
| C1H1g25213 | 1:26,110,625-26,112,855 | + | C2H1g15823 | CX1g004301 | LOC_Os01g50900 | Os01g0705100 | - | Detail |
| C1H1g21576 | 1:26,113,539-26,114,397 | - | C2H1g26032 | CX1g000838 | LOC_Os01g50910 | Os01g0705200 | - | Detail |
| C1H1g05260 | 1:26,120,883-26,127,375 | - | C2H1g29456 | CX1g001929 | LOC_Os01g50930 | Os01g0705300 | - | Detail |
| C1H1g21715 | 1:26,123,692-26,124,324 | + | C2H1g24270 | - | - | Os01g0705400 | - | Detail |
| C1H1g27177 | 1:26,127,503-26,128,790 | + | C2H1g07553 | CX1g003964 | LOC_Os01g50934 | Os01g0705500 | - | Detail |
| C1H1g13995 | 1:26,157,344-26,159,669 | - | C2H1g16474 | CX1g005079 | LOC_Os01g50960 | Os01g0706000 | - | Detail |
| C1H1g02045 | 1:26,174,485-26,180,668 | + | C2H1g14086 | CX1g004939 | LOC_Os01g51010 | Os01g0706400 | - | Detail |
| C1H1g15565 | 1:26,181,695-26,183,063 | + | C2H1g20410 | CX1g003219 | LOC_Os01g51020 | Os01g0706500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g22972 | 9:319,742-324,687 | + | C1H9g01741 | CX9g057297 | LOC_Os09g01600 | Os09g0103200 | - | Detail |
| C2H9g16676 | 9:328,751-329,740 | - | - | CX9g056224 | LOC_Os09g01610 | Os09g0103400 | - | Detail |
| C2H9g07969 | 9:332,866-338,494 | + | C1H9g12264 | CX9g055170 | LOC_Os09g01620 | Os09g0103500 | - | Detail |
| C2H9g23774 | 9:340,939-347,729 | - | C1H9g24389 | CX9g055607 | LOC_Os09g01630 | Os09g0103600 | - | Detail |
| C2H9g29883 | 9:352,438-353,571 | + | - | CX9g057259 | LOC_Os09g01640 | Os09g0103700 | - | Detail |
| C2H9g16389 | 9:376,815-377,173 | - | C1H9g20260 | CX9g057224 | - | - | - | Detail |
| C2H9g22729 | 9:378,725-385,026 | + | C1H9g06955 | CX9g055907 | LOC_Os09g01650 | Os09g0103800 | - | Detail |
| C2H9g16634 | 9:406,184-412,350 | - | C1H9g22354 | CX9g057376 | LOC_Os09g01680 | Os09g0104200 | RAD51D, OsRAD51D.3, OsRAD51D, OsRad51D | Detail |
| C2H9g14701 | 9:412,420-415,177 | + | C1H9g21586 | - | LOC_Os09g01690 | Os09g0104300 | - | Detail |
| C2H9g10538 | 9:416,660-419,290 | - | - | CX9g056747 | LOC_Os09g01700 | Os09g0104700 | - | Detail |
| C2H9g17453 | 9:446,949-450,853 | - | C1H9g13033 | CX9g054917 | LOC_Os09g01790 | - | - | Detail |
| C2H9g11873 | 9:488,506-491,881 | + | C1H9g15386 | CX9g056345 | - | - | - | Detail |
| C2H9g07049 | 9:540,701-541,678 | - | - | CX9g057727 | LOC_Os09g01960 | Os09g0106700 | - | Detail |
| C2H9g27759 | 9:579,666-579,827 | - | - | CX9g056249 | LOC_Os09g02000 | Os09g0107400 | - | Detail |
| C2H9g16224 | 9:604,424-611,143 | + | C1H9g28229 | CX9g056897 | LOC_Os09g02130 | Os09g0108400 | - | Detail |
| C2H9g00527 | 9:621,532-627,797 | + | C1H9g14656 | CX9g058002 | LOC_Os09g02140 | Os09g0108600 | - | Detail |
| C2H9g13991 | 9:630,539-631,420 | - | - | - | - | - | - | Detail |
| C2H9g03100 | 9:654,975-655,436 | + | - | CX9g056432 | LOC_Os09g02150 | - | - | Detail |
| C2H9g06082 | 9:665,702-671,407 | - | C1H9g00172 | CX9g056152 | LOC_Os09g02170 | Os09g0109500 | - | Detail |
| C2H9g24122 | 9:673,188-673,482 | + | C1H9g18224 | - | LOC_Os09g02180 | Os09g0109600 | OsDSSR1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |