| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H6g15783 | 6:15,562,910-15,566,238 | - | C2H6g22301 | CX6g043543 | LOC_Os06g22660 | Os06g0332600 | - | Detail |
| C1H6g12037 | 6:15,579,407-15,581,621 | + | C2H6g09049 | CX6g044702 | LOC_Os06g22654 | Os06g0332500 | - | Detail |
| C1H6g19506 | 6:15,583,201-15,591,471 | - | C2H6g08521 | CX6g042511 | LOC_Os06g22650 | Os06g0332400 | - | Detail |
| C1H6g12048 | 6:15,601,427-15,602,926 | - | - | CX6g044220 | LOC_Os06g22600 | Os06g0331900 | - | Detail |
| C1H6g20948 | 6:15,669,970-15,672,275 | - | C2H6g13258 | - | LOC_Os06g30760 | - | - | Detail |
| C1H6g10286 | 6:15,681,215-15,685,500 | - | C2H6g12922 | CX6g042971 | LOC_Os06g30750 | Os06g0503400 | - | Detail |
| C1H6g26484 | 6:15,714,110-15,715,987 | + | C2H6g08007 | CX6g044810 | LOC_Os06g30730 | Os06g0503100 | - | Detail |
| C1H6g14188 | 6:15,724,400-15,725,911 | - | C2H6g13647 | CX6g045929 | LOC_Os06g30710 | Os06g0502900 | - | Detail |
| C1H6g11062 | 6:15,788,955-15,795,023 | + | C2H6g24697 | CX6g041387 | LOC_Os06g30700 | Os06g0502800 | - | Detail |
| C1H6g27686 | 6:15,815,145-15,820,143 | - | C2H6g09315 | - | LOC_Os06g30680 | - | - | Detail |
| C1H6g02542 | 6:15,820,932-15,821,312 | - | C2H6g09315 | - | LOC_Os06g30680 | - | - | Detail |
| C1H6g16467 | 6:15,875,998-15,878,886 | - | C2H6g26556 | - | LOC_Os06g16040 | Os06g0271400 | - | Detail |
| C1H6g22494 | 6:15,959,961-15,973,669 | - | C2H6g03410 | CX6g043950 | LOC_Os06g22550 | Os06g0331300 | - | Detail |
| C1H6g25339 | 6:16,043,709-16,044,299 | - | C2H6g28684 | CX1g003326 | LOC_Os11g03280 | Os11g0126500 | - | Detail |
| C1H6g28196 | 6:16,054,314-16,085,791 | - | C2H6g01043 | CX6g044956 | LOC_Os06g30894 | Os06g0505100 | - | Detail |
| C1H6g26122 | 6:16,088,990-16,089,947 | + | - | - | - | - | - | Detail |
| C1H6g25110 | 6:16,089,957-16,094,534 | + | C2H6g09051 | CX6g042361 | LOC_Os06g30910 | Os06g0505400 | - | Detail |
| C1H6g24962 | 6:16,098,287-16,100,624 | + | C2H6g22604 | CX6g043862 | - | Os06g0505700 | - | Detail |
| C1H6g07322 | 6:16,118,927-16,122,197 | + | - | - | - | - | - | Detail |
| C1H6g31826 | 6:16,124,665-16,126,497 | + | C2H6g18363 | CX6g045779 | LOC_Os06g30930 | Os06g0506000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g02193 | 3:26,699,326-26,706,899 | + | C1H3g19794 | CX3g028424 | LOC_Os03g50980 | Os03g0719100 | SIZ2, OsSIZ2 | Detail |
| C2H3g22670 | 3:26,708,932-26,716,540 | - | C1H3g27091 | CX3g025374 | LOC_Os03g51000 | Os03g0719300 | - | Detail |
| C2H3g02088 | 3:26,720,194-26,723,023 | - | C1H3g07073 | CX3g028369 | LOC_Os03g51010 | Os03g0719400 | - | Detail |
| C2H3g19826 | 3:26,728,386-26,735,558 | - | C1H3g18727 | CX3g030509 | LOC_Os03g51020 | Os03g0719500 | - | Detail |
| C2H3g21521 | 3:26,738,385-26,746,105 | - | C1H3g17828 | CX3g025792 | LOC_Os03g51030 | Os03g0719800 | PHYA, phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA | Detail |
| C2H3g23219 | 3:26,750,154-26,752,376 | - | C1H3g02668 | CX3g027542 | LOC_Os03g51040 | Os03g0719850 | - | Detail |
| C2H3g09005 | 3:26,753,854-26,757,585 | - | C1H3g04945 | CX3g029279 | LOC_Os03g51050 | Os03g0719900 | - | Detail |
| C2H3g27436 | 3:26,776,619-26,798,197 | + | C1H3g17570 | CX3g026462 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| C2H3g28128 | 3:26,800,176-26,801,438 | + | C1H3g14449 | CX3g027259 | LOC_Os03g51090 | Os03g0720400 | - | Detail |
| C2H3g18749 | 3:26,802,500-26,803,954 | + | C1H3g00523 | CX11g011204 | LOC_Os11g37260 | - | - | Detail |
| C2H3g30385 | 3:26,815,065-26,819,266 | + | C1H3g14449 | CX3g027259 | LOC_Os03g51090 | Os03g0720400 | - | Detail |
| C2H3g13711 | 3:26,826,622-26,828,116 | + | C1H3g17570 | CX3g026462 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| C2H3g08962 | 3:26,845,435-26,846,852 | + | C1H3g27041 | CX3g028983 | LOC_Os03g51110 | Os03g0720800 | Os2R_MYB41 | Detail |
| C2H3g28611 | 3:26,857,234-26,880,062 | + | C1H3g28337 | CX3g027802 | LOC_Os03g51140 | Os03g0721200 | - | Detail |
| C2H3g23618 | 3:26,880,115-26,882,433 | - | C1H3g18786 | CX3g029589 | LOC_Os03g51150 | Os03g0721300 | - | Detail |
| C2H3g12002 | 3:26,883,244-26,886,210 | - | C1H3g12607 | CX3g029088 | LOC_Os03g51160 | Os03g0721400 | - | Detail |
| C2H3g26307 | 3:26,890,520-26,893,306 | - | C1H3g28641 | CX3g025020 | LOC_Os03g51180 | - | - | Detail |
| C2H3g16842 | 3:26,903,282-26,903,796 | + | C1H3g29102 | CX3g026654 | LOC_Os03g51200 | Os03g0279200 | - | Detail |
| C2H3g24429 | 3:26,907,935-26,913,652 | + | C1H3g04974 | CX3g029940 | LOC_Os03g51220 | Os03g0722100 | - | Detail |
| C2H3g01976 | 3:26,917,235-26,923,450 | + | C1H3g07846 | CX3g030800 | LOC_Os03g51230 | Os03g0722400 | OsDDM1b | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |