| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H6g15163 | 6:10,909,527-10,910,436 | - | C2H6g26915 | CX6g041667 | LOC_Os06g22490 | Os06g0330400 | - | Detail |
| C1H6g09694 | 6:10,954,544-10,956,187 | + | C2H6g04886 | CX6g044761 | LOC_Os06g30500 | Os06g0500700 | - | Detail |
| C1H6g11051 | 6:10,965,151-10,966,143 | + | C2H6g22788 | CX6g044102 | LOC_Os06g30480 | Os06g0500300 | - | Detail |
| C1H6g28721 | 6:10,976,054-10,987,872 | + | C2H6g30055 | CX6g043386 | LOC_Os06g30460 | Os06g0499900 | - | Detail |
| C1H6g12504 | 6:10,992,445-10,995,760 | + | C2H6g17391 | CX6g045782 | LOC_Os06g30440 | Os06g0499500 | - | Detail |
| C1H6g27560 | 6:11,001,556-11,004,371 | + | C2H6g10972 | CX6g041652 | LOC_Os06g30420 | Os06g0499301 | - | Detail |
| C1H6g28317 | 6:11,019,202-11,025,947 | - | C2H6g00827 | CX6g043980 | LOC_Os06g30390 | Os06g0499000 | - | Detail |
| C1H6g05561 | 6:11,028,295-11,031,851 | - | C2H6g00485 | CX6g041677 | LOC_Os06g30380 | Os06g0498900 | - | Detail |
| C1H6g00209 | 6:11,037,216-11,039,505 | + | C2H6g17443 | CX6g043686 | LOC_Os06g30370 | Os06g0498800 | OsMFT1 | Detail |
| C1H6g25364 | 6:11,070,496-11,071,062 | + | C2H6g29118 | CX6g043303 | - | - | - | Detail |
| C1H6g18187 | 6:11,077,474-11,084,340 | - | C2H6g16872 | CX6g043053 | LOC_Os06g30320 | Os06g0498500 | - | Detail |
| C1H6g27568 | 6:11,089,003-11,100,261 | - | C2H6g24539 | CX6g041803 | LOC_Os06g30310 | Os06g0498400 | GWD1 | Detail |
| C1H6g26182 | 6:11,127,801-11,132,082 | - | C2H6g28212 | CX6g043036 | LOC_Os06g30210 | Os06g0497500 | - | Detail |
| C1H6g07599 | 6:11,146,507-11,148,404 | - | C2H6g12814 | CX6g042956 | LOC_Os06g30179 | Os06g0497350 | - | Detail |
| C1H6g09677 | 6:11,181,814-11,184,302 | - | C2H6g12911 | CX6g045078 | LOC_Os06g30130 | Os06g0496800 | - | Detail |
| C1H6g04894 | 6:11,209,923-11,210,907 | - | C2H6g25876 | CX6g041544 | LOC_Os06g30090 | Os06g0496400 | OsbHLH127, OsRSL3 | Detail |
| C1H6g31457 | 6:11,222,490-11,229,832 | - | C2H6g13439 | CX6g043076 | LOC_Os06g30060 | Os06g0496000 | - | Detail |
| C1H6g22414 | 6:11,242,696-11,243,706 | - | C2H6g00870 | CX6g043852 | LOC_Os06g30030 | Os06g0495800 | - | Detail |
| C1H6g11371 | 6:11,248,268-11,255,708 | - | C2H6g25334 | CX6g042382 | LOC_Os06g30020 | Os06g0495700 | - | Detail |
| C1H6g09138 | 6:11,258,987-11,261,280 | - | C2H6g17906 | CX6g045784 | LOC_Os06g29994 | Os06g0495500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g08146 | 3:25,060,344-25,073,286 | + | C1H3g30763 | CX3g027759 | - | - | - | Detail |
| C2H3g06193 | 3:25,080,310-25,093,249 | - | C1H3g31689 | CX3g025545 | LOC_Os03g48140 | Os03g0686300 | - | Detail |
| C2H3g15650 | 3:25,099,612-25,102,820 | + | C1H3g17077 | CX3g025241 | LOC_Os03g48160 | Os03g0253100 | - | Detail |
| C2H3g12008 | 3:25,104,383-25,108,435 | + | C1H3g31064 | CX3g025276 | LOC_Os03g48170 | Os03g0686900 | FLO6 | Detail |
| C2H3g19404 | 3:25,109,095-25,114,669 | - | C1H3g04074 | CX3g025668 | LOC_Os03g51050 | Os03g0687000 | OsNPF2.4, NPF2.4, OsPTR2, PTR2 | Detail |
| C2H3g17935 | 3:25,127,611-25,131,595 | - | C1H3g27780 | CX3g029198 | LOC_Os03g48190 | Os03g0687200 | - | Detail |
| C2H3g12687 | 3:25,135,284-25,136,030 | - | C1H3g26805 | CX3g025750 | LOC_Os03g48200 | Os03g0687400 | - | Detail |
| C2H3g13078 | 3:25,137,917-25,138,663 | - | C1H3g31647 | CX3g029222 | LOC_Os03g48220 | Os03g0687700 | - | Detail |
| C2H3g02466 | 3:25,140,936-25,141,493 | - | C1H3g02479 | CX3g025750 | LOC_Os03g48225 | Os03g0687800 | - | Detail |
| C2H3g05793 | 3:25,142,535-25,143,269 | - | C1H3g12014 | CX3g028579 | LOC_Os03g48235 | Os03g0688000 | - | Detail |
| C2H3g06136 | 3:25,144,788-25,145,247 | - | C1H3g12256 | CX3g029222 | LOC_Os03g48220 | Os03g0687700 | - | Detail |
| C2H3g19874 | 3:25,146,922-25,151,844 | + | C1H3g24497 | CX3g029090 | LOC_Os03g48260 | Os03g0688200 | - | Detail |
| C2H3g05160 | 3:25,157,608-25,163,002 | + | C1H3g21570 | CX3g025253 | LOC_Os03g48270 | Os03g0688300 | CDPK9, OsCDPK9, OsCPK9 | Detail |
| C2H3g19979 | 3:25,186,796-25,214,847 | + | C1H3g15303 | CX3g027485 | LOC_Os03g48300 | Os03g0689100 | - | Detail |
| C2H3g24844 | 3:25,222,977-25,230,070 | + | C1H3g28879 | CX3g027452 | LOC_Os03g48310 | Os03g0689300 | - | Detail |
| C2H3g06110 | 3:25,231,632-25,235,399 | - | C1H3g09435 | CX3g026383 | LOC_Os03g48380 | Os03g0689900 | - | Detail |
| C2H3g14932 | 3:25,237,216-25,239,557 | + | C1H3g04287 | CX3g027552 | LOC_Os03g48390 | Os03g0690000 | - | Detail |
| C2H3g03020 | 3:25,282,883-25,286,063 | - | C1H3g28354 | CX3g028707 | LOC_Os03g48450 | Os03g0690600 | - | Detail |
| C2H3g18585 | 3:25,290,921-25,294,737 | + | C1H3g15398 | - | LOC_Os03g48471 | Os03g0690700 | - | Detail |
| C2H3g25812 | 3:25,324,182-25,326,537 | - | C1H3g11606 | CX3g027625 | LOC_Os03g48480 | Os03g0691400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |