| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g13243 | 1:25,204,245-25,205,597 | + | C2H1g16101 | CX1g000245 | LOC_Os01g49260 | Os01g0686500 | - | Detail |
| C1H1g17217 | 1:25,209,965-25,212,286 | + | C2H1g11919 | CX1g005008 | LOC_Os01g49270 | Os01g0686600 | - | Detail |
| C1H1g23518 | 1:25,212,939-25,214,873 | - | C2H1g06792 | CX1g006716 | LOC_Os01g49280 | Os01g0686700 | - | Detail |
| C1H1g28000 | 1:25,219,332-25,221,680 | + | C2H1g18988 | CX1g000667 | LOC_Os01g49290 | Os01g0686800 | - | Detail |
| C1H1g24973 | 1:25,225,480-25,230,660 | + | C2H1g26696 | CX1g006327 | LOC_Os01g49310 | Os01g0687300 | - | Detail |
| C1H1g17002 | 1:25,235,048-25,235,983 | - | C2H1g29685 | CX1g004166 | LOC_Os01g49320 | Os01g0687400 | - | Detail |
| C1H1g24886 | 1:25,239,103-25,240,014 | - | C2H1g15847 | CX1g002308 | LOC_Os01g49320 | Os01g0687400 | - | Detail |
| C1H1g25078 | 1:25,245,330-25,249,334 | + | C2H1g12257 | CX1g002582 | LOC_Os01g49330 | Os01g0687500 | - | Detail |
| C1H1g30547 | 1:25,251,784-25,254,003 | - | C2H1g24499 | CX1g004001 | LOC_Os01g49340 | Os01g0687600 | - | Detail |
| C1H1g13249 | 1:25,254,697-25,257,459 | - | C2H1g11352 | CX1g004559 | LOC_Os01g49350 | Os01g0687700 | - | Detail |
| C1H1g18645 | 1:25,259,350-25,262,648 | - | C2H1g17351 | CX1g000658 | LOC_Os01g49360 | Os01g0687800 | - | Detail |
| C1H1g03295 | 1:25,264,251-25,264,802 | - | C2H1g02129 | CX1g006320 | - | - | - | Detail |
| C1H1g06737 | 1:25,266,738-25,269,722 | - | C2H1g03797 | CX1g000285 | LOC_Os01g49380 | Os01g0688200 | - | Detail |
| C1H1g05158 | 1:25,299,574-25,300,336 | - | C2H1g16538 | CX1g004118 | LOC_Os01g49410 | Os01g0688600 | - | Detail |
| C1H1g14442 | 1:25,302,337-25,304,275 | - | C2H1g05242 | CX1g004763 | LOC_Os01g49430 | Os01g0688900 | - | Detail |
| C1H1g07960 | 1:25,308,175-25,309,116 | + | C2H1g18382 | CX1g005316 | LOC_Os01g49440 | Os01g0689000 | - | Detail |
| C1H1g27870 | 1:25,322,708-25,333,831 | - | C2H1g18558 | CX1g000580 | LOC_Os01g49470 | Os01g0689451 | OsHRZ1 | Detail |
| C1H1g26809 | 1:25,342,808-25,345,965 | - | C2H1g12129 | CX1g003352 | LOC_Os01g49490 | Os01g0689600 | - | Detail |
| C1H1g26834 | 1:25,360,265-25,363,213 | + | C2H1g09258 | CX1g005650 | LOC_Os01g49510 | Os01g0689800 | - | Detail |
| C1H1g04543 | 1:25,363,774-25,368,887 | - | C2H1g12314 | CX1g005155 | LOC_Os01g49529 | Os01g0136400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g07424 | 9:19,218,434-19,222,530 | + | C1H9g13374 | CX9g057785 | LOC_Os09g39220 | Os09g0565600 | - | Detail |
| C2H9g05946 | 9:19,224,305-19,225,510 | + | C1H9g26902 | CX9g055093 | LOC_Os09g39230 | Os09g0565700 | - | Detail |
| C2H9g19055 | 9:19,229,128-19,230,339 | + | C1H9g23958 | CX9g057620 | LOC_Os09g39260 | Os09g0566050 | - | Detail |
| C2H9g15395 | 9:19,231,647-19,237,669 | - | C1H9g25655 | CX9g056260 | LOC_Os09g39270 | Os09g0566100 | - | Detail |
| C2H9g06176 | 9:19,245,063-19,247,290 | - | C1H9g18076 | CX9g056096 | LOC_Os09g39310 | Os09g0567000 | - | Detail |
| C2H9g22038 | 9:19,251,638-19,252,552 | - | C1H9g18076 | CX9g056096 | LOC_Os09g39310 | Os09g0567000 | - | Detail |
| C2H9g09064 | 9:19,256,964-19,263,700 | - | C1H9g21987 | CX9g056096 | LOC_Os09g39320 | Os09g0566550 | - | Detail |
| C2H9g08732 | 9:19,265,273-19,266,640 | - | C1H9g31128 | CX9g056096 | LOC_Os09g39350 | Os09g0567000 | - | Detail |
| C2H9g17992 | 9:19,273,423-19,277,358 | + | C1H9g04890 | CX9g056849 | LOC_Os09g39380 | Os09g0567300 | MDHAR, OsMDHAR, OsMDAR3, OsMDHAR3 | Detail |
| C2H9g25680 | 9:19,277,859-19,280,562 | + | C1H9g13266 | CX9g058049 | LOC_Os09g39390 | Os09g0567366 | - | Detail |
| C2H9g00653 | 9:19,282,863-19,285,337 | + | C1H9g16090 | CX9g056022 | LOC_Os09g39400 | Os09g0567400 | - | Detail |
| C2H9g10548 | 9:19,289,359-19,295,560 | + | C1H9g25909 | CX9g057497 | LOC_Os09g39410 | Os09g0567500 | - | Detail |
| C2H9g15634 | 9:19,296,740-19,301,777 | + | C1H9g01897 | CX9g055257 | LOC_Os09g39420 | Os09g0567700 | - | Detail |
| C2H9g07527 | 9:19,301,792-19,305,375 | - | C1H9g27590 | CX9g058075 | LOC_Os09g39430 | Os09g0567800 | - | Detail |
| C2H9g28844 | 9:19,309,307-19,311,969 | - | C1H9g04610 | CX9g058045 | LOC_Os09g39440 | Os09g0567900 | - | Detail |
| C2H9g14034 | 9:19,314,286-19,318,425 | + | C1H9g06631 | CX9g055030 | LOC_Os09g39462 | Os09g0568000 | - | Detail |
| C2H9g07303 | 9:19,319,765-19,321,171 | + | C1H9g18800 | CX9g055723 | LOC_Os09g39474 | Os09g0568100 | - | Detail |
| C2H9g14146 | 9:19,321,995-19,323,316 | - | C1H9g25533 | CX9g055477 | LOC_Os09g39490 | Os09g0568200 | - | Detail |
| C2H9g28333 | 9:19,333,286-19,334,722 | - | C1H9g27100 | CX9g057377 | LOC_Os09g39540 | Os09g0568800 | - | Detail |
| C2H9g03364 | 9:19,334,994-19,336,916 | + | C1H9g30656 | CX9g055404 | LOC_Os09g39550 | Os09g0568900 | IF1-2, IF<sub>1</sub>-2 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |