| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H6g00685 | 6:5,847,765-5,850,782 | - | C2H6g25379 | CX6g044633 | LOC_Os06g12330 | Os06g0228600 | - | Detail |
| C1H6g13390 | 6:5,854,491-5,857,802 | - | C2H6g08385 | CX6g044499 | LOC_Os06g12350 | Os06g0228800 | - | Detail |
| C1H6g15439 | 6:5,862,508-5,863,566 | + | C2H6g28900 | CX6g044911 | LOC_Os06g12360 | Os06g0228950 | - | Detail |
| C1H6g14481 | 6:5,864,281-5,867,040 | - | C2H6g05024 | CX6g043477 | LOC_Os06g12370 | Os06g0229000 | - | Detail |
| C1H6g30867 | 6:5,876,244-5,881,974 | + | C2H6g02329 | CX6g043791 | LOC_Os06g12390 | Os06g0229200 | GalT | Detail |
| C1H6g06761 | 6:5,885,054-5,892,816 | + | C2H6g13941 | CX6g041469 | LOC_Os06g12400 | Os06g0229300 | - | Detail |
| C1H6g31791 | 6:5,894,252-5,895,858 | + | C2H6g19443 | CX6g045028 | LOC_Os06g12410 | Os06g0257600 | - | Detail |
| C1H6g30269 | 6:5,897,349-5,902,200 | + | C2H6g15100 | CX6g044435 | LOC_Os06g12450 | Os06g0229800 | ALK, alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6 | Detail |
| C1H6g02539 | 6:5,907,005-5,912,074 | + | C2H6g02967 | CX6g041722 | LOC_Os06g12460 | Os06g0230100 | OsCSLA3 | Detail |
| C1H6g20958 | 6:5,920,549-5,921,358 | + | C2H6g18393 | CX6g043899 | LOC_Os06g12500 | Os06g0231050 | CASP3, OsCASP3 | Detail |
| C1H6g10940 | 6:5,925,763-5,927,919 | + | C2H6g25430 | CX6g042953 | LOC_Os06g12530 | Os06g0231300 | ROX3 | Detail |
| C1H6g09372 | 6:5,936,391-5,938,743 | - | C2H6g20507 | CX6g042127 | LOC_Os06g12560 | Os06g0231600 | - | Detail |
| C1H6g21654 | 6:5,941,708-5,944,965 | - | C2H6g04942 | CX6g045497 | LOC_Os06g12580 | Os06g0232000 | - | Detail |
| C1H6g04188 | 6:5,947,891-5,948,394 | + | - | CX6g042920 | - | - | - | Detail |
| C1H6g16903 | 6:5,949,407-5,959,343 | - | C2H6g06021 | CX6g044039 | LOC_Os06g12590 | Os06g0232100 | - | Detail |
| C1H6g16972 | 6:5,969,640-5,975,418 | + | C2H6g20456 | CX6g043544 | LOC_Os06g12600 | Os06g0232200 | OsFRK3 | Detail |
| C1H6g17211 | 6:5,992,757-5,996,174 | + | C2H6g11066 | CX6g041379 | LOC_Os06g12610 | Os06g0232300 | OsPIN1a | Detail |
| C1H6g01622 | 6:6,001,337-6,001,843 | - | C2H6g26342 | CX6g043622 | LOC_Os06g12620 | Os06g0232400 | - | Detail |
| C1H6g13976 | 6:6,015,004-6,017,900 | - | C2H6g04539 | CX6g045802 | LOC_Os06g12630 | Os06g0232600 | - | Detail |
| C1H6g19729 | 6:6,022,157-6,022,933 | + | C2H6g12736 | - | LOC_Os06g12640 | Os06g0232700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g14354 | 2:19,784,929-19,785,165 | + | C1H2g09389 | - | - | - | - | Detail |
| C2H2g12148 | 2:19,786,045-19,789,305 | + | C1H2g08637 | CX2g020150 | LOC_Os02g34830 | Os02g0553500 | - | Detail |
| C2H2g01733 | 2:19,791,366-19,793,147 | + | C1H2g26060 | CX2g021020 | LOC_Os02g34840 | Os02g0553600 | - | Detail |
| C2H2g02626 | 2:19,803,188-19,816,975 | + | C1H2g16138 | CX2g022480 | LOC_Os02g34850 | Os02g0554000 | SDG725 | Detail |
| C2H2g19545 | 2:19,821,930-19,827,618 | + | C1H2g19627 | CX2g024528 | LOC_Os02g34860 | Os02g0554100 | - | Detail |
| C2H2g06775 | 2:19,830,134-19,844,577 | - | C1H2g18794 | CX2g020839 | LOC_Os02g34884 | Os02g0554300 | GH1 | Detail |
| C2H2g25302 | 2:19,856,162-19,860,514 | - | C1H2g10952 | CX2g019829 | LOC_Os02g34940 | Os02g0554900 | - | Detail |
| C2H2g15722 | 2:19,861,908-19,864,847 | - | C1H2g26487 | CX2g020204 | LOC_Os02g34950 | Os02g0555000 | - | Detail |
| C2H2g16732 | 2:19,866,855-19,867,227 | - | C1H2g14187 | - | - | - | - | Detail |
| C2H2g20499 | 2:19,868,697-19,869,441 | - | C1H2g06862 | - | - | Os02g0555200 | - | Detail |
| C2H2g29653 | 2:19,871,355-19,872,175 | + | C1H2g01665 | CX2g024213 | LOC_Os02g34970 | Os02g0555300 | NAC028 | Detail |
| C2H2g29738 | 2:19,890,246-19,893,648 | + | C1H2g11878 | CX2g024461 | LOC_Os02g34990 | Os02g0555600 | - | Detail |
| C2H2g07415 | 2:19,894,486-19,897,956 | - | C1H2g01867 | CX2g022003 | LOC_Os02g35000 | Os02g0555700 | - | Detail |
| C2H2g17028 | 2:19,904,671-19,910,963 | - | C1H2g16690 | CX2g024240 | LOC_Os02g35010 | Os02g0555900 | - | Detail |
| C2H2g28137 | 2:19,917,004-19,921,815 | - | C1H2g29141 | CX2g024007 | LOC_Os02g35020 | Os02g0556000 | - | Detail |
| C2H2g11684 | 2:19,930,689-19,938,038 | + | C1H2g14041 | CX2g020938 | LOC_Os02g35039 | Os02g0556100 | - | Detail |
| C2H2g16395 | 2:19,939,314-19,942,036 | - | C1H2g15959 | CX2g020681 | LOC_Os02g35060 | Os02g0556400 | - | Detail |
| C2H2g15584 | 2:19,943,211-19,949,725 | - | - | CX2g021510 | LOC_Os02g35070 | Os02g0556600 | - | Detail |
| C2H2g29862 | 2:19,952,910-19,958,695 | + | C1H2g14953 | CX2g020225 | LOC_Os02g35080 | Os02g0556700 | - | Detail |
| C2H2g08339 | 2:19,958,803-19,959,927 | - | C1H2g02257 | CX2g023638 | LOC_Os02g35090 | Os02g0556800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |