| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g22731 | 1:24,806,899-24,821,417 | - | C2H1g03816 | CX1g004904 | LOC_Os01g48680 | Os01g0678500 | TPC1, OsTPC1, Tpc1, OsCC1 | Detail |
| C1H1g06484 | 1:24,822,645-24,824,648 | + | C2H1g17432 | CX1g001832 | LOC_Os01g48690 | Os01g0678600 | - | Detail |
| C1H1g21202 | 1:24,825,534-24,828,516 | - | C2H1g29587 | CX1g005378 | LOC_Os01g48700 | Os01g0678700 | - | Detail |
| C1H1g29809 | 1:24,831,421-24,834,882 | + | C2H1g22453 | CX1g000800 | - | - | - | Detail |
| C1H1g09148 | 1:24,836,776-24,837,408 | - | C2H1g18621 | CX1g006182 | LOC_Os01g48710 | Os01g0678800 | - | Detail |
| C1H1g01369 | 1:24,845,874-24,854,466 | + | C2H1g02873 | CX1g006519 | LOC_Os01g48720 | Os01g0679000 | - | Detail |
| C1H1g15834 | 1:24,862,555-24,939,365 | - | C2H1g22016 | CX1g002522 | LOC_Os01g48830 | Os01g0680700 | - | Detail |
| C1H1g09308 | 1:24,863,371-24,867,936 | + | C2H1g10975 | CX1g004313 | LOC_Os01g48750 | Os01g0679550 | - | Detail |
| C1H1g00895 | 1:24,869,571-24,872,932 | + | C2H1g25010 | CX1g003619 | LOC_Os01g48760 | Os01g0679600 | - | Detail |
| C1H1g15404 | 1:24,886,940-24,893,719 | + | C2H1g01242 | CX1g003718 | LOC_Os01g48790 | Os01g0679900 | - | Detail |
| C1H1g14743 | 1:24,904,493-24,905,653 | + | C2H1g18628 | CX1g004327 | LOC_Os01g48800 | Os01g0680200 | OsPUP4, BG3/OsPUP4, BG3 | Detail |
| C1H1g08166 | 1:24,917,950-24,920,122 | + | C2H1g09841 | CX1g006918 | LOC_Os01g48810 | Os01g0680400 | - | Detail |
| C1H1g07424 | 1:24,925,640-24,926,551 | + | C2H1g14175 | CX1g002655 | LOC_Os01g48820 | Os01g0680600 | - | Detail |
| C1H1g07492 | 1:24,931,644-24,932,133 | + | - | - | - | Os01g0680650 | - | Detail |
| C1H1g17992 | 1:24,948,315-24,950,911 | - | C2H1g29263 | CX1g007143 | LOC_Os01g48850 | Os01g0680900 | - | Detail |
| C1H1g20689 | 1:24,952,547-24,958,250 | - | C2H1g05013 | CX1g002388 | LOC_Os01g48874 | Os01g0681000 | - | Detail |
| C1H1g14533 | 1:24,963,599-24,966,274 | + | C2H1g17133 | CX1g001461 | LOC_Os01g48900 | Os01g0681100 | - | Detail |
| C1H1g07251 | 1:24,966,702-24,969,016 | + | C2H1g07127 | CX1g001461 | LOC_Os01g48900 | Os05g0556100 | - | Detail |
| C1H1g21340 | 1:24,970,459-24,975,608 | - | C2H1g13127 | CX1g007055 | LOC_Os01g48910 | Os01g0681200 | - | Detail |
| C1H1g18369 | 1:24,978,777-24,984,105 | - | C2H1g29187 | CX1g000478 | LOC_Os01g48920 | Os01g0681400 | ATG6A, OsATG6a | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g12926 | 2:8,398,024-8,407,326 | - | C1H2g02864 | CX2g021533 | LOC_Os02g15970 | Os02g0260400 | - | Detail |
| C2H2g06594 | 2:8,421,106-8,424,884 | + | C1H2g27751 | CX2g022911 | LOC_Os02g15980 | Os02g0260500 | - | Detail |
| C2H2g13675 | 2:8,429,741-8,434,737 | + | C1H2g12308 | CX2g024506 | LOC_Os02g16000 | Os02g0260700 | - | Detail |
| C2H2g11255 | 2:8,442,972-8,447,418 | + | C1H2g28079 | CX2g022743 | LOC_Os02g16030 | Os02g0261000 | - | Detail |
| C2H2g01960 | 2:8,453,074-8,456,145 | + | C1H2g11370 | CX2g019327 | LOC_Os02g16040 | Os02g0261100 | UBC5B, OsUBC5b, OsUBC15, UBC15 | Detail |
| C2H2g28917 | 2:8,474,737-8,476,580 | - | C1H2g19487 | CX2g019137 | LOC_Os02g16450 | Os02g0264300 | - | Detail |
| C2H2g15600 | 2:8,484,030-8,486,771 | + | C1H2g26765 | CX12g017249 | - | Os02g0264700 | - | Detail |
| C2H2g19236 | 2:8,491,369-8,493,017 | - | C1H2g01441 | CX2g020509 | LOC_Os02g16500 | Os02g0264800 | - | Detail |
| C2H2g18599 | 2:8,510,506-8,511,828 | + | C1H2g28048 | CX2g020341 | - | Os02g0265200 | - | Detail |
| C2H2g26523 | 2:8,519,973-8,524,819 | - | C1H2g03793 | CX2g020464 | LOC_Os02g16550 | Os02g0265400 | - | Detail |
| C2H2g05519 | 2:8,535,952-8,539,041 | + | C1H2g08201 | CX2g024020 | LOC_Os02g16600 | Os02g0265700 | - | Detail |
| C2H2g05448 | 2:8,541,749-8,543,418 | + | C1H2g01209 | CX2g024020 | LOC_Os02g16600 | - | - | Detail |
| C2H2g08731 | 2:8,547,536-8,550,180 | + | C1H2g19593 | CX2g018867 | LOC_Os02g16620 | Os02g0265900 | - | Detail |
| C2H2g11052 | 2:8,553,731-8,556,643 | + | C1H2g16850 | CX2g024509 | LOC_Os02g16630 | Os02g0266000 | - | Detail |
| C2H2g16179 | 2:8,557,636-8,560,663 | - | C1H2g16838 | CX2g020102 | LOC_Os02g16640 | Os02g0266100 | - | Detail |
| C2H2g13852 | 2:8,561,291-8,565,243 | + | C1H2g07521 | CX2g019119 | LOC_Os02g16650 | Os02g0266200 | - | Detail |
| C2H2g26198 | 2:8,565,648-8,569,602 | - | C1H2g20133 | CX2g019965 | LOC_Os02g16660 | Os02g0266300 | - | Detail |
| C2H2g08908 | 2:8,574,153-8,574,386 | + | C1H2g02204 | - | LOC_Os02g16670 | Os02g0266500 | - | Detail |
| C2H2g01743 | 2:8,574,402-8,582,399 | + | C1H2g23899 | CX2g021513 | LOC_Os02g16670 | Os02g0266500 | - | Detail |
| C2H2g25795 | 2:8,586,425-8,589,119 | - | C1H2g03225 | CX2g020479 | LOC_Os02g16680 | Os02g0266800 | RISBZ3, RITA1, RITA-1, OsbZIP20 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |