| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g22731 | 1:24,806,899-24,821,417 | - | C2H1g03816 | CX1g004904 | LOC_Os01g48680 | Os01g0678500 | TPC1, OsTPC1, Tpc1, OsCC1 | Detail |
| C1H1g06484 | 1:24,822,645-24,824,648 | + | C2H1g17432 | CX1g001832 | LOC_Os01g48690 | Os01g0678600 | - | Detail |
| C1H1g21202 | 1:24,825,534-24,828,516 | - | C2H1g29587 | CX1g005378 | LOC_Os01g48700 | Os01g0678700 | - | Detail |
| C1H1g29809 | 1:24,831,421-24,834,882 | + | C2H1g22453 | CX1g000800 | - | - | - | Detail |
| C1H1g09148 | 1:24,836,776-24,837,408 | - | C2H1g18621 | CX1g006182 | LOC_Os01g48710 | Os01g0678800 | - | Detail |
| C1H1g01369 | 1:24,845,874-24,854,466 | + | C2H1g02873 | CX1g006519 | LOC_Os01g48720 | Os01g0679000 | - | Detail |
| C1H1g15834 | 1:24,862,555-24,939,365 | - | C2H1g22016 | CX1g002522 | LOC_Os01g48830 | Os01g0680700 | - | Detail |
| C1H1g09308 | 1:24,863,371-24,867,936 | + | C2H1g10975 | CX1g004313 | LOC_Os01g48750 | Os01g0679550 | - | Detail |
| C1H1g00895 | 1:24,869,571-24,872,932 | + | C2H1g25010 | CX1g003619 | LOC_Os01g48760 | Os01g0679600 | - | Detail |
| C1H1g15404 | 1:24,886,940-24,893,719 | + | C2H1g01242 | CX1g003718 | LOC_Os01g48790 | Os01g0679900 | - | Detail |
| C1H1g14743 | 1:24,904,493-24,905,653 | + | C2H1g18628 | CX1g004327 | LOC_Os01g48800 | Os01g0680200 | OsPUP4, BG3/OsPUP4, BG3 | Detail |
| C1H1g08166 | 1:24,917,950-24,920,122 | + | C2H1g09841 | CX1g006918 | LOC_Os01g48810 | Os01g0680400 | - | Detail |
| C1H1g07424 | 1:24,925,640-24,926,551 | + | C2H1g14175 | CX1g002655 | LOC_Os01g48820 | Os01g0680600 | - | Detail |
| C1H1g07492 | 1:24,931,644-24,932,133 | + | - | - | - | Os01g0680650 | - | Detail |
| C1H1g17992 | 1:24,948,315-24,950,911 | - | C2H1g29263 | CX1g007143 | LOC_Os01g48850 | Os01g0680900 | - | Detail |
| C1H1g20689 | 1:24,952,547-24,958,250 | - | C2H1g05013 | CX1g002388 | LOC_Os01g48874 | Os01g0681000 | - | Detail |
| C1H1g14533 | 1:24,963,599-24,966,274 | + | C2H1g17133 | CX1g001461 | LOC_Os01g48900 | Os01g0681100 | - | Detail |
| C1H1g07251 | 1:24,966,702-24,969,016 | + | C2H1g07127 | CX1g001461 | LOC_Os01g48900 | Os05g0556100 | - | Detail |
| C1H1g21340 | 1:24,970,459-24,975,608 | - | C2H1g13127 | CX1g007055 | LOC_Os01g48910 | Os01g0681200 | - | Detail |
| C1H1g18369 | 1:24,978,777-24,984,105 | - | C2H1g29187 | CX1g000478 | LOC_Os01g48920 | Os01g0681400 | ATG6A, OsATG6a | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H12g19349 | 12:763,081-764,979 | - | C1H12g12088 | CX12g017873 | LOC_Os12g02530 | Os12g0117400 | - | Detail |
| C2H12g22545 | 12:768,060-772,253 | - | C1H12g20634 | CX12g018206 | LOC_Os12g02540 | Os12g0117600 | - | Detail |
| C2H12g27463 | 12:789,751-793,492 | - | C1H12g05381 | CX12g018096 | LOC_Os12g02570 | Os12g0118200 | - | Detail |
| C2H12g28419 | 12:795,474-796,428 | + | - | - | - | Os11g0118950 | - | Detail |
| C2H12g08883 | 12:796,771-800,358 | + | C1H12g04502 | CX12g016451 | LOC_Os12g02589 | Os11g0119100 | - | Detail |
| C2H12g28914 | 12:804,947-810,257 | + | C1H12g16556 | CX12g017203 | LOC_Os12g02630 | Os12g0118900 | - | Detail |
| C2H12g10917 | 12:811,436-814,302 | + | C1H12g17017 | CX12g015245 | LOC_Os12g02640 | Os12g0119000 | - | Detail |
| C2H12g22928 | 12:830,606-834,848 | + | C1H12g05483 | CX12g017227 | LOC_Os12g02690 | Os12g0119700 | - | Detail |
| C2H12g23626 | 12:838,705-841,387 | - | C1H12g10191 | CX12g015948 | LOC_Os12g02710 | Os12g0120000 | - | Detail |
| C2H12g20723 | 12:854,123-856,006 | + | C1H12g18119 | CX12g015909 | LOC_Os12g02730 | Os12g0120400 | - | Detail |
| C2H12g25977 | 12:860,608-862,033 | + | C1H12g02825 | CX12g015909 | LOC_Os11g02774 | Os12g0120400 | - | Detail |
| C2H12g16514 | 12:873,289-873,781 | - | C1H11g20989 | CX12g015653 | LOC_Os12g02800 | Os12g0121000 | - | Detail |
| C2H12g02944 | 12:876,031-880,831 | - | C1H12g13346 | CX12g018642 | LOC_Os12g02810 | Os12g0121100 | - | Detail |
| C2H12g05365 | 12:886,794-892,232 | - | C1H11g18986 | CX12g018412 | LOC_Os12g02820 | Os12g0121300 | - | Detail |
| C2H12g04137 | 12:931,617-934,464 | + | C1H12g14855 | CX12g016172 | LOC_Os12g02870 | Os12g0122000 | OsSCR2, OsSCR | Detail |
| C2H12g18933 | 12:940,391-942,241 | + | C1H12g28099 | CX12g017383 | LOC_Os12g02880 | Os12g0122100 | - | Detail |
| C2H12g09481 | 12:951,892-957,242 | - | C1H12g23065 | CX12g015575 | LOC_Os12g02910 | Os12g0122400 | - | Detail |
| C2H12g27594 | 12:959,716-960,652 | - | - | - | - | - | - | Detail |
| C2H12g19230 | 12:970,430-972,960 | - | C1H12g24619 | CX12g018155 | LOC_Os12g02950 | Os12g0123100 | - | Detail |
| C2H12g08707 | 12:974,529-975,211 | + | C1H12g31160 | CX12g018818 | LOC_Os12g02960 | Os12g0123200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |