| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g23946 | 5:24,298,161-24,299,642 | + | C2H5g15674 | - | LOC_Os05g51650 | Os05g0594900 | - | Detail |
| C1H5g07547 | 5:24,299,970-24,300,566 | - | C2H5g18619 | CX5g039507 | LOC_Os05g51660 | Os05g0595000 | - | Detail |
| C1H5g22966 | 5:24,306,790-24,310,218 | + | C2H5g04566 | CX5g037190 | LOC_Os05g51670 | Os05g0595100 | OsUGE1, OsUGE-1, UGE1, UGE-1, BP1 | Detail |
| C1H5g29705 | 5:24,314,276-24,338,423 | + | C2H5g00689 | CX5g037572 | LOC_Os05g51690 | Os05g0595300 | CRCT, NRR, NRRa | Detail |
| C1H5g17200 | 5:24,314,364-24,315,098 | - | C2H5g03425 | CX5g039657 | LOC_Os05g51680 | Os05g0595200 | - | Detail |
| C1H5g10995 | 5:24,338,704-24,341,533 | - | C2H5g25216 | CX5g038125 | LOC_Os05g51700 | Os05g0595400 | - | Detail |
| C1H5g27674 | 5:24,342,371-24,344,469 | - | C2H5g14814 | CX5g041076 | LOC_Os05g51710 | Os05g0595500 | - | Detail |
| C1H5g24835 | 5:24,350,690-24,354,556 | - | C2H5g23094 | CX5g037161 | LOC_Os05g51740 | Os05g0595800 | - | Detail |
| C1H5g11204 | 5:24,357,393-24,357,937 | - | C2H5g15029 | CX5g037472 | LOC_Os05g45954 | Os05g0121600 | RSR1, OsTOE1, AP2/EREBP#090, AP2/EREBP90 | Detail |
| C1H5g19628 | 5:24,359,119-24,360,738 | + | C2H5g10878 | CX5g037109 | LOC_Os05g51750 | Os05g0596000 | - | Detail |
| C1H5g15344 | 5:24,362,940-24,363,852 | - | C2H5g03677 | CX5g040213 | LOC_Os05g51754 | Os05g0596200 | - | Detail |
| C1H5g05425 | 5:24,370,389-24,371,543 | + | C2H5g02505 | CX5g038377 | LOC_Os05g51780 | Os05g0596500 | - | Detail |
| C1H5g04142 | 5:24,380,267-24,392,932 | - | C2H5g19295 | CX5g038266 | LOC_Os05g51790 | Os05g0596600 | OsSMC5 | Detail |
| C1H5g09886 | 5:24,394,335-24,397,839 | + | C2H5g24076 | CX5g040422 | LOC_Os05g51800 | Os05g0596700 | - | Detail |
| C1H5g06124 | 5:24,399,765-24,400,578 | + | C2H5g17322 | CX5g039358 | LOC_Os05g51820 | Os05g0597000 | OsMUTE | Detail |
| C1H5g15760 | 5:24,403,463-24,406,171 | - | C2H5g24478 | CX5g038345 | LOC_Os05g51830 | Os05g0597100 | HDT1, OsHDT1, HDT701 | Detail |
| C1H5g16210 | 5:24,406,864-24,410,928 | - | C2H5g14678 | CX5g038501 | LOC_Os05g51850 | Os05g0597200 | - | Detail |
| C1H5g10848 | 5:24,413,074-24,414,807 | + | C2H5g20513 | CX5g040358 | LOC_Os05g51860 | Os05g0597400 | - | Detail |
| C1H5g07885 | 5:24,443,447-24,443,701 | - | C2H5g12335 | CX5g039366 | LOC_Os05g51900 | Os05g0597700 | - | Detail |
| C1H6g09491 | 6:33,828-40,991 | + | C2H6g15066 | CX6g041728 | LOC_Os06g01170 | Os06g0101000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g07837 | 3:12,240,186-12,240,422 | + | C1H3g29038 | - | - | - | - | Detail |
| C2H3g30335 | 3:12,245,811-12,246,437 | + | C1H3g24260 | CX3g028005 | LOC_Os03g24560 | Os03g0360300 | - | Detail |
| C2H3g23651 | 3:12,249,595-12,252,420 | + | C1H3g06016 | CX3g026622 | - | Os03g0202500 | - | Detail |
| C2H3g11576 | 3:12,259,279-12,263,067 | - | C1H3g10908 | CX3g025165 | LOC_Os03g24520 | Os03g0359700 | - | Detail |
| C2H3g27563 | 3:12,267,546-12,271,810 | - | C1H3g04236 | CX3g029301 | LOC_Os03g24580 | Os03g0360500 | - | Detail |
| C2H3g30143 | 3:12,278,164-12,281,650 | + | C1H3g00317 | CX3g028418 | LOC_Os03g24600 | Os03g0360700 | OsMSRB5 | Detail |
| C2H3g18552 | 3:12,283,269-12,286,896 | + | C1H3g00810 | CX3g030502 | LOC_Os03g24610 | Os03g0360800 | - | Detail |
| C2H3g08848 | 3:12,299,353-12,302,445 | + | C1H3g10968 | CX3g028091 | LOC_Os03g24640 | Os03g0361100 | - | Detail |
| C2H3g01009 | 3:12,311,712-12,314,711 | + | C1H3g10968 | CX3g028091 | LOC_Os03g24640 | Os03g0361100 | - | Detail |
| C2H3g10773 | 3:12,322,815-12,324,226 | - | C1H3g06434 | CX3g028227 | LOC_Os03g24650 | Os03g0362500 | - | Detail |
| C2H3g17062 | 3:12,325,139-12,325,479 | - | C1H3g14470 | CX3g028227 | LOC_Os03g24690 | Os03g0361500 | - | Detail |
| C2H3g13152 | 3:12,341,926-12,347,771 | + | C1H3g24193 | CX3g028193 | LOC_Os03g24680 | Os03g0361600 | - | Detail |
| C2H3g10176 | 3:12,373,064-12,373,448 | + | - | - | - | Os05g0380200 | - | Detail |
| C2H3g09511 | 3:12,391,665-12,395,308 | - | C1H3g23561 | - | - | - | - | Detail |
| C2H3g25785 | 3:12,397,990-12,399,111 | - | C1H3g19660 | CX3g028363 | LOC_Os03g24690 | Os03g0361700 | - | Detail |
| C2H3g04211 | 3:12,399,508-12,401,225 | - | C1H3g14470 | CX3g028363 | LOC_Os03g24690 | Os03g0361700 | - | Detail |
| C2H3g13576 | 3:12,417,591-12,417,910 | + | C1H3g24193 | CX3g028193 | LOC_Os03g24710 | Os03g0362032 | - | Detail |
| C2H3g17100 | 3:12,425,984-12,426,265 | + | C1H3g07323 | CX3g028193 | LOC_Os03g24720 | Os03g0362032 | - | Detail |
| C2H3g06450 | 3:12,426,879-12,429,300 | + | C1H3g06434 | CX3g028227 | LOC_Os03g24760 | Os03g0362500 | - | Detail |
| C2H3g08257 | 3:12,442,084-12,446,166 | - | C1H3g26242 | CX3g030811 | LOC_Os03g24650 | Os03g0361700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |