| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g23946 | 5:24,298,161-24,299,642 | + | C2H5g15674 | - | LOC_Os05g51650 | Os05g0594900 | - | Detail |
| C1H5g07547 | 5:24,299,970-24,300,566 | - | C2H5g18619 | CX5g039507 | LOC_Os05g51660 | Os05g0595000 | - | Detail |
| C1H5g22966 | 5:24,306,790-24,310,218 | + | C2H5g04566 | CX5g037190 | LOC_Os05g51670 | Os05g0595100 | OsUGE1, OsUGE-1, UGE1, UGE-1, BP1 | Detail |
| C1H5g29705 | 5:24,314,276-24,338,423 | + | C2H5g00689 | CX5g037572 | LOC_Os05g51690 | Os05g0595300 | CRCT, NRR, NRRa | Detail |
| C1H5g17200 | 5:24,314,364-24,315,098 | - | C2H5g03425 | CX5g039657 | LOC_Os05g51680 | Os05g0595200 | - | Detail |
| C1H5g10995 | 5:24,338,704-24,341,533 | - | C2H5g25216 | CX5g038125 | LOC_Os05g51700 | Os05g0595400 | - | Detail |
| C1H5g27674 | 5:24,342,371-24,344,469 | - | C2H5g14814 | CX5g041076 | LOC_Os05g51710 | Os05g0595500 | - | Detail |
| C1H5g24835 | 5:24,350,690-24,354,556 | - | C2H5g23094 | CX5g037161 | LOC_Os05g51740 | Os05g0595800 | - | Detail |
| C1H5g11204 | 5:24,357,393-24,357,937 | - | C2H5g15029 | CX5g037472 | LOC_Os05g45954 | Os05g0121600 | RSR1, OsTOE1, AP2/EREBP#090, AP2/EREBP90 | Detail |
| C1H5g19628 | 5:24,359,119-24,360,738 | + | C2H5g10878 | CX5g037109 | LOC_Os05g51750 | Os05g0596000 | - | Detail |
| C1H5g15344 | 5:24,362,940-24,363,852 | - | C2H5g03677 | CX5g040213 | LOC_Os05g51754 | Os05g0596200 | - | Detail |
| C1H5g05425 | 5:24,370,389-24,371,543 | + | C2H5g02505 | CX5g038377 | LOC_Os05g51780 | Os05g0596500 | - | Detail |
| C1H5g04142 | 5:24,380,267-24,392,932 | - | C2H5g19295 | CX5g038266 | LOC_Os05g51790 | Os05g0596600 | OsSMC5 | Detail |
| C1H5g09886 | 5:24,394,335-24,397,839 | + | C2H5g24076 | CX5g040422 | LOC_Os05g51800 | Os05g0596700 | - | Detail |
| C1H5g06124 | 5:24,399,765-24,400,578 | + | C2H5g17322 | CX5g039358 | LOC_Os05g51820 | Os05g0597000 | OsMUTE | Detail |
| C1H5g15760 | 5:24,403,463-24,406,171 | - | C2H5g24478 | CX5g038345 | LOC_Os05g51830 | Os05g0597100 | HDT1, OsHDT1, HDT701 | Detail |
| C1H5g16210 | 5:24,406,864-24,410,928 | - | C2H5g14678 | CX5g038501 | LOC_Os05g51850 | Os05g0597200 | - | Detail |
| C1H5g10848 | 5:24,413,074-24,414,807 | + | C2H5g20513 | CX5g040358 | LOC_Os05g51860 | Os05g0597400 | - | Detail |
| C1H5g07885 | 5:24,443,447-24,443,701 | - | C2H5g12335 | CX5g039366 | LOC_Os05g51900 | Os05g0597700 | - | Detail |
| C1H6g09491 | 6:33,828-40,991 | + | C2H6g15066 | CX6g041728 | LOC_Os06g01170 | Os06g0101000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g25012 | 3:11,363,444-11,365,260 | - | C1H3g19465 | CX3g031034 | LOC_Os03g22270 | Os03g0342900 | - | Detail |
| C2H3g07847 | 3:11,371,881-11,376,882 | + | C1H3g19573 | CX3g027432 | LOC_Os03g22320 | Os03g0343300 | - | Detail |
| C2H3g27542 | 3:11,378,434-11,382,128 | + | C1H3g04598 | CX3g030144 | LOC_Os03g22330 | Os03g0343400 | - | Detail |
| C2H3g22833 | 3:11,383,871-11,385,472 | - | C1H3g18164 | CX3g027840 | LOC_Os03g22340 | Os03g0343500 | - | Detail |
| C2H3g27042 | 3:11,389,626-11,392,034 | + | C1H3g07503 | CX3g028939 | LOC_Os03g22350 | Os03g0343700 | - | Detail |
| C2H3g07184 | 3:11,401,989-11,406,699 | + | C1H3g24513 | CX3g027723 | LOC_Os03g22380 | Os03g0344100 | OsSR32 | Detail |
| C2H3g20782 | 3:11,410,545-11,412,615 | - | C1H3g14886 | CX3g030547 | LOC_Os03g22390 | Os03g0305400 | OsUSP3 | Detail |
| C2H3g20681 | 3:11,414,281-11,419,375 | - | C1H3g05435 | CX3g030391 | LOC_Os03g22400 | Os03g0344300 | OsFUG1, OsFUG1.3 | Detail |
| C2H3g04996 | 3:11,428,070-11,438,987 | - | C1H3g07428 | CX3g028417 | LOC_Os03g22420 | Os03g0344700 | - | Detail |
| C2H3g03468 | 3:11,444,495-11,448,954 | - | C1H3g00349 | CX3g028111 | LOC_Os03g22430 | Os03g0344900 | - | Detail |
| C2H3g18234 | 3:11,454,918-11,459,144 | - | C1H3g20152 | CX3g028584 | LOC_Os03g22450 | Os03g0345100 | OsRad9, OsRad9.2 | Detail |
| C2H3g01674 | 3:11,459,289-11,460,721 | + | C1H3g20510 | CX3g029736 | LOC_Os03g22460 | Os03g0345200 | - | Detail |
| C2H3g02585 | 3:11,462,484-11,464,298 | - | C1H3g29872 | CX3g029517 | LOC_Os03g22470 | Os03g0345300 | - | Detail |
| C2H3g21914 | 3:11,481,807-11,483,706 | - | C1H3g23882 | CX3g027384 | LOC_Os03g22490 | Os03g0345700 | - | Detail |
| C2H3g16014 | 3:11,520,023-11,520,352 | - | C1H3g04062 | CX3g030360 | LOC_Os03g22510 | Os03g0346200 | ACE1, OsSIN | Detail |
| C2H3g21311 | 3:11,537,918-11,544,352 | + | C1H3g13519 | CX3g029712 | LOC_Os03g22540 | Os03g0346700 | - | Detail |
| C2H3g14665 | 3:11,546,502-11,551,840 | + | C1H3g09102 | CX3g029457 | LOC_Os03g22550 | Os03g0346800 | - | Detail |
| C2H3g24882 | 3:11,555,281-11,560,901 | - | C1H3g03973 | CX3g027020 | LOC_Os03g22560 | Os03g0346900 | - | Detail |
| C2H3g28349 | 3:11,571,302-11,582,977 | + | C1H3g06261 | CX3g030324 | LOC_Os03g22570 | Os03g0347200 | - | Detail |
| C2H3g09980 | 3:11,585,339-11,596,872 | - | C1H3g24032 | CX3g026560 | LOC_Os03g22580 | Os03g0347300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |