| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g17721 | 5:24,162,309-24,165,726 | - | C2H5g08893 | CX5g037640 | LOC_Os05g51420 | Os08g0398400 | OsHIR1, OsHSI1 | Detail |
| C1H5g09746 | 5:24,168,834-24,169,897 | + | C2H5g12015 | - | LOC_Os05g51440 | Os05g0592000 | - | Detail |
| C1H5g13463 | 5:24,170,131-24,173,578 | - | C2H5g20454 | CX5g037130 | LOC_Os05g51450 | Os05g0592100 | AL3, OsClpR1 | Detail |
| C1H5g18064 | 5:24,179,127-24,181,265 | + | C2H5g22532 | CX5g037674 | LOC_Os05g51470 | Os05g0592300 | - | Detail |
| C1H5g29997 | 5:24,183,995-24,184,294 | - | C2H5g07753 | - | LOC_Os04g46270 | - | - | Detail |
| C1H5g01451 | 5:24,184,448-24,184,892 | - | C2H5g11116 | CX5g040049 | - | Os04g0547800 | - | Detail |
| C1H5g21435 | 5:24,185,320-24,200,810 | + | C2H5g07712 | CX5g039347 | LOC_Os05g51480 | Os05g0592400 | - | Detail |
| C1H5g00098 | 5:24,202,938-24,208,839 | - | C2H5g25797 | CX5g041136 | LOC_Os05g51500 | Os05g0592600 | - | Detail |
| C1H5g06239 | 5:24,210,272-24,213,792 | - | C2H5g18379 | CX5g038095 | LOC_Os05g51510 | Os05g0592800 | - | Detail |
| C1H5g06040 | 5:24,217,329-24,223,625 | - | C2H5g13073 | CX5g040640 | LOC_Os05g51520 | Os05g0593000 | - | Detail |
| C1H5g29585 | 5:24,224,922-24,226,117 | - | C2H5g03858 | CX5g039758 | LOC_Os05g51540 | Os05g0593200 | - | Detail |
| C1H5g12721 | 5:24,227,927-24,238,894 | - | C2H5g22607 | CX5g036829 | LOC_Os05g51550 | Os05g0593550 | - | Detail |
| C1H5g11475 | 5:24,240,257-24,240,706 | - | C2H5g18281 | - | - | - | - | Detail |
| C1H5g20997 | 5:24,241,554-24,246,418 | - | C2H5g29211 | CX5g038490 | LOC_Os05g51560 | Os05g0593800 | - | Detail |
| C1H5g28104 | 5:24,249,627-24,251,054 | - | C2H5g25800 | CX5g040981 | LOC_Os05g51570 | Os05g0593900 | - | Detail |
| C1H5g28669 | 5:24,259,780-24,260,625 | - | C2H5g28633 | CX5g037849 | LOC_Os05g51590 | Os05g0594100 | - | Detail |
| C1H5g07980 | 5:24,262,701-24,266,582 | - | C2H5g27012 | CX5g040080 | LOC_Os05g51610 | Os05g0594200 | OsCAX1b | Detail |
| C1H5g15566 | 5:24,269,560-24,275,165 | - | C2H5g24138 | CX5g038359 | LOC_Os05g51620 | Os05g0594500 | - | Detail |
| C1H5g26110 | 5:24,284,106-24,291,948 | + | C2H5g08909 | CX5g041049 | LOC_Os05g51630 | Os05g0594700 | - | Detail |
| C1H5g09316 | 5:24,293,145-24,297,780 | - | C2H5g25499 | CX5g039720 | LOC_Os05g51640 | Os05g0594800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g20602 | 1:33,825,406-33,829,243 | - | C1H1g06784 | CX1g002810 | LOC_Os01g65940 | Os01g0881966 | - | Detail |
| C2H1g14820 | 1:33,829,342-33,829,683 | - | - | - | - | - | - | Detail |
| C2H1g18577 | 1:33,831,291-33,831,649 | + | C1H1g26227 | CX1g002714 | LOC_Os01g65950 | Os01g0882100 | - | Detail |
| C2H1g05908 | 1:33,835,359-33,841,512 | + | C1H1g03465 | CX1g004350 | LOC_Os01g65986 | Os01g0882300 | - | Detail |
| C2H1g09811 | 1:33,841,734-33,842,687 | - | C1H1g00623 | CX1g004839 | LOC_Os01g66000 | Os01g0882500 | - | Detail |
| C2H1g26075 | 1:33,844,719-33,847,776 | - | C1H1g12565 | CX1g001863 | LOC_Os01g66010 | Os01g0882800 | OsAAP8 | Detail |
| C2H1g11503 | 1:33,854,099-33,856,181 | - | C1H1g27902 | CX1g000214 | LOC_Os01g66030 | Os01g0883100 | OsMADS2 | Detail |
| C2H1g08965 | 1:33,858,404-33,865,168 | + | C1H1g29165 | CX1g004776 | LOC_Os01g66050 | Os01g0883200 | - | Detail |
| C2H1g18953 | 1:33,898,433-33,901,519 | + | C1H1g04579 | CX1g004921 | LOC_Os01g66100 | Os01g0883800 | 20ox2, C20OX2, GA20, GA20ox-2, Os20ox2, OsGA20ox-2, OsGA20ox2, SD1, SD1-in, SD1-ja, Sd-1, d47, d49, sd-1, sd1, "sd1 (d47, sd1-d, sd1-1)", sd1-1, sd1-2, sd1-3, sd1-4 | Detail |
| C2H1g12762 | 1:33,902,414-33,907,948 | - | C1H1g11499 | CX1g004480 | LOC_Os01g66110 | Os01g0883900 | - | Detail |
| C2H1g26289 | 1:33,916,327-33,918,090 | - | C1H1g00819 | CX1g006945 | LOC_Os01g66120 | Os01g0884300 | OsNAC6 | Detail |
| C2H1g15992 | 1:33,927,325-33,931,236 | + | C1H1g22008 | CX1g000207 | LOC_Os01g66130 | Os01g0884400 | OsPUB16, OsPIE3 | Detail |
| C2H1g16552 | 1:33,931,364-33,942,765 | - | C1H1g14405 | CX1g001201 | LOC_Os01g66140 | Os01g0884500 | - | Detail |
| C2H1g27234 | 1:33,944,159-33,947,234 | - | C1H1g17014 | CX1g001119 | - | - | - | Detail |
| C2H1g20664 | 1:33,951,528-33,953,587 | - | C1H1g08290 | CX1g001844 | LOC_Os01g66150 | Os01g0884700 | - | Detail |
| C2H1g19237 | 1:33,955,455-33,957,011 | + | C1H1g07105 | CX1g005283 | LOC_Os01g66160 | Os01g0884800 | - | Detail |
| C2H1g27259 | 1:33,957,249-33,960,272 | - | C1H1g15937 | CX1g006373 | LOC_Os01g66170 | Os01g0884900 | - | Detail |
| C2H1g17695 | 1:33,961,162-33,963,507 | + | C1H1g27873 | CX1g005687 | LOC_Os01g66180 | Os01g0885000 | - | Detail |
| C2H1g03917 | 1:33,970,832-33,976,494 | - | C1H1g19782 | CX1g002733 | LOC_Os01g66200 | Os01g0885300 | - | Detail |
| C2H1g15479 | 1:33,981,535-33,987,010 | - | C1H1g04510 | CX1g006568 | LOC_Os01g66230 | Os01g0885500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |