| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g05102 | 5:23,899,181-23,901,054 | + | C2H5g08711 | CX5g039086 | LOC_Os05g50770 | Os05g0584900 | - | Detail |
| C1H5g03901 | 5:23,907,339-23,909,665 | + | C2H5g19125 | CX5g036814 | LOC_Os05g50800 | Os05g0585400 | - | Detail |
| C1H5g16468 | 5:23,910,275-23,914,399 | - | C2H5g30392 | CX5g039624 | LOC_Os05g50810 | Os05g0585500 | OsCPK15 | Detail |
| C1H5g19912 | 5:23,916,451-23,917,138 | + | C2H5g27655 | - | LOC_Os05g50815 | Os05g0580900 | - | Detail |
| C1H5g12424 | 5:23,919,755-23,922,342 | - | C2H5g10246 | CX5g039076 | LOC_Os05g50820 | Os05g0585700 | - | Detail |
| C1H5g08867 | 5:23,925,086-23,927,161 | + | C2H5g21671 | CX5g037322 | LOC_Os05g50830 | Os05g0585800 | - | Detail |
| C1H5g02224 | 5:23,927,320-23,932,019 | - | C2H5g07511 | CX5g039391 | LOC_Os05g50840 | Os05g0585900 | - | Detail |
| C1H5g05725 | 5:23,955,193-23,960,476 | + | C2H5g12537 | CX5g037391 | LOC_Os05g50890 | Os05g0586200 | OsGH3-5, OsGH3.5, OsJAR1, JAR1 | Detail |
| C1H5g23433 | 5:23,963,202-23,965,330 | - | C2H5g22033 | CX5g040329 | LOC_Os05g50900 | Os05g0586300 | OsFAMA | Detail |
| C1H5g03676 | 5:23,967,831-23,973,608 | + | C2H5g28495 | CX5g037684 | LOC_Os05g50910 | Os05g0586400 | - | Detail |
| C1H5g31726 | 5:23,975,293-23,977,983 | + | C2H5g17335 | CX5g037746 | LOC_Os05g50920 | Os05g0586500 | - | Detail |
| C1H5g23972 | 5:23,978,930-23,983,305 | + | C2H5g13829 | CX5g037636 | LOC_Os05g50930 | Os05g0586700 | - | Detail |
| C1H5g28475 | 5:23,985,140-23,987,650 | + | C2H5g11484 | CX5g039824 | LOC_Os05g50950 | Os05g0586900 | - | Detail |
| C1H5g12900 | 5:23,988,579-23,990,873 | - | C2H5g29430 | CX5g038144 | LOC_Os05g50960 | Os05g0587000 | - | Detail |
| C1H5g28542 | 5:23,992,790-23,997,284 | - | C2H5g22520 | CX5g038565 | LOC_Os05g50970 | Os05g0587100 | - | Detail |
| C1H5g23902 | 5:24,000,126-24,004,336 | + | C2H5g13453 | CX5g038972 | LOC_Os05g50980 | Os05g0587200 | - | Detail |
| C1H5g05422 | 5:24,006,127-24,010,276 | - | C2H5g04498 | CX5g038828 | LOC_Os05g50990 | Os05g0587300 | - | Detail |
| C1H5g00207 | 5:24,019,486-24,021,971 | - | C2H5g26610 | CX5g039424 | LOC_Os05g51000 | Os05g0587400 | - | Detail |
| C1H5g22939 | 5:24,026,266-24,028,441 | - | C2H5g23551 | CX5g038264 | LOC_Os05g51020 | Os05g0587700 | - | Detail |
| C1H5g10111 | 5:24,036,513-24,039,279 | - | C2H5g16401 | CX5g040862 | LOC_Os05g51050 | Os05g0588100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g15328 | 5:13,245,215-13,246,649 | + | C1H5g07750 | CX5g039225 | LOC_Os05g27340 | Os05g0339200 | - | Detail |
| C2H5g14220 | 5:13,282,150-13,285,062 | + | C1H5g05577 | CX5g036883 | LOC_Os05g27500 | Os05g0341100 | - | Detail |
| C2H5g02870 | 5:13,299,797-13,304,709 | - | C1H5g03022 | CX5g040935 | LOC_Os05g26890 | Os05g0333200 | D1, RGA1 | Detail |
| C2H5g16957 | 5:13,312,045-13,314,888 | - | - | - | - | - | - | Detail |
| C2H5g07220 | 5:13,315,571-13,316,116 | - | - | CX5g039361 | - | - | - | Detail |
| C2H5g23486 | 5:13,318,027-13,322,181 | - | C1H5g06416 | CX5g038002 | LOC_Os05g27530 | Os05g0341600 | - | Detail |
| C2H5g01175 | 5:13,338,234-13,341,924 | - | C1H5g16606 | CX5g037918 | LOC_Os05g27580 | Os05g0342000 | - | Detail |
| C2H5g27836 | 5:13,367,425-13,371,031 | + | C1H5g14668 | CX5g037297 | LOC_Os05g27660 | Os05g0342900 | - | Detail |
| C2H5g28661 | 5:13,397,426-13,399,285 | + | C1H5g15039 | CX5g040774 | LOC_Os05g27730 | Os05g0343400 | WRKY53, OsWRKY53 | Detail |
| C2H5g16881 | 5:13,402,969-13,404,011 | - | C1H5g04216 | CX5g038974 | LOC_Os05g27740 | - | - | Detail |
| C2H5g15026 | 5:13,412,762-13,414,025 | + | C1H5g25967 | - | - | - | - | Detail |
| C2H5g02617 | 5:13,433,767-13,439,055 | + | C1H5g00690 | CX5g039180 | LOC_Os05g28090 | Os05g0348100 | OsNdhl | Detail |
| C2H5g26312 | 5:13,440,416-13,440,905 | - | C1H5g23669 | CX5g039491 | - | Os05g0588300 | - | Detail |
| C2H5g18593 | 5:13,472,752-13,473,606 | + | C1H5g19699 | CX5g039840 | LOC_Os05g28040 | Os05g0347400 | OsG1L9 | Detail |
| C2H5g24655 | 5:13,486,633-13,489,312 | + | C1H5g17201 | CX5g038657 | LOC_Os05g28010 | Os05g0347000 | - | Detail |
| C2H5g25283 | 5:13,509,667-13,510,360 | + | C1H5g26235 | CX5g041112 | LOC_Os05g27980 | Os05g0346800 | - | Detail |
| C2H5g25338 | 5:13,514,389-13,521,143 | + | C1H5g30238 | CX5g037334 | LOC_Os05g27960 | Os05g0346500 | Endo-Os | Detail |
| C2H5g21564 | 5:13,521,830-13,528,684 | - | C1H5g26042 | CX5g037807 | LOC_Os05g27950 | Os05g0346400 | - | Detail |
| C2H5g17547 | 5:13,528,839-13,531,813 | + | C1H5g02425 | CX5g037658 | LOC_Os05g27940 | Os05g0346300 | - | Detail |
| C2H5g29783 | 5:13,534,126-13,537,414 | + | C1H5g00367 | CX5g041046 | LOC_Os05g27930 | Os05g0346200 | OsDREB2B | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |