| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g12203 | 1:1,433,916-1,434,686 | - | C2H1g16545 | CX1g005405 | - | - | - | Detail |
| C1H1g15246 | 1:1,434,378-1,436,403 | + | C2H1g07174 | - | - | Os01g0131600 | - | Detail |
| C1H1g02133 | 1:1,442,836-1,445,842 | + | C2H1g05018 | CX1g003409 | LOC_Os01g04030 | Os01g0131800 | - | Detail |
| C1H1g08168 | 1:1,446,206-1,446,508 | + | C2H1g20844 | - | - | - | - | Detail |
| C1H1g15335 | 1:1,446,251-1,446,618 | - | C2H1g04580 | CX1g004518 | LOC_Os01g04040 | Os01g0131900 | - | Detail |
| C1H1g16579 | 1:1,448,499-1,449,002 | - | C2H1g05431 | CX1g000794 | LOC_Os01g04050 | Os01g0132000 | - | Detail |
| C1H1g12945 | 1:1,452,792-1,457,386 | + | C2H1g02524 | CX1g001373 | LOC_Os01g04070 | Os01g0132100 | - | Detail |
| C1H1g14509 | 1:1,464,182-1,467,138 | - | C2H1g22548 | CX1g001468 | LOC_Os01g04090 | Os01g0132400 | - | Detail |
| C1H1g11742 | 1:1,472,648-1,473,399 | + | C2H1g29009 | CX1g006344 | LOC_Os01g04100 | Os01g0132500 | - | Detail |
| C1H1g15684 | 1:1,479,815-1,481,666 | - | C2H1g03848 | CX1g005382 | LOC_Os01g04110 | Os01g0132700 | - | Detail |
| C1H1g26304 | 1:1,501,494-1,505,717 | - | C2H1g01357 | CX1g003338 | LOC_Os01g04130 | Os01g0132800 | OsCRS2, CRS2 | Detail |
| C1H1g25093 | 1:1,512,116-1,515,949 | + | C2H1g27153 | CX1g006935 | LOC_Os01g04160 | Os01g0133100 | - | Detail |
| C1H1g00222 | 1:1,520,778-1,531,979 | + | C2H1g09944 | CX1g002370 | LOC_Os01g04190 | Os01g0133400 | OspGlcT1 | Detail |
| C1H1g18877 | 1:1,533,346-1,534,714 | + | C2H1g25293 | CX1g004995 | LOC_Os01g04210 | Os01g0133600 | - | Detail |
| C1H1g05286 | 1:1,538,596-1,540,317 | + | C2H1g22644 | CX1g006533 | LOC_Os01g04220 | Os01g0133700 | - | Detail |
| C1H1g27859 | 1:1,541,956-1,544,123 | + | C2H1g03551 | CX1g002225 | LOC_Os01g04230 | Os01g0133900 | - | Detail |
| C1H1g26351 | 1:1,558,608-1,562,381 | + | C2H1g29327 | CX1g006646 | LOC_Os01g04260 | Os01g0134500 | - | Detail |
| C1H1g03192 | 1:1,572,602-1,574,485 | + | C2H1g24695 | CX1g006565 | LOC_Os01g04280 | Os01g0134700 | - | Detail |
| C1H1g21390 | 1:1,577,753-1,580,523 | - | C2H1g28679 | CX1g007193 | LOC_Os01g04290 | Os01g0134800 | - | Detail |
| C1H1g29863 | 1:1,583,684-1,585,953 | - | C2H1g27423 | CX1g006983 | LOC_Os01g04300 | Os01g0134900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g06554 | 1:1,267,481-1,270,261 | - | C1H1g14698 | CX1g000136 | LOC_Os01g03640 | Os01g0127200 | OsLPR5, OsSTA2 | Detail |
| C2H1g21958 | 1:1,273,959-1,277,999 | - | C1H1g30854 | CX1g005762 | LOC_Os01g03650 | Os01g0127300 | - | Detail |
| C2H1g24576 | 1:1,278,156-1,280,615 | + | C1H1g00412 | CX1g003465 | LOC_Os01g03660 | Os01g0127400 | - | Detail |
| C2H1g17865 | 1:1,282,083-1,282,775 | + | C1H1g25838 | CX1g002042 | LOC_Os01g19970 | Os01g0127450 | - | Detail |
| C2H1g02319 | 1:1,283,305-1,284,401 | + | C1H1g17663 | CX1g005179 | LOC_Os01g03670 | Os01g0127500 | OsTKPR2 | Detail |
| C2H1g19770 | 1:1,285,305-1,285,871 | + | C1H1g11231 | CX1g002886 | LOC_Os01g03680 | Os01g0127600 | - | Detail |
| C2H1g03781 | 1:1,288,272-1,291,329 | + | C1H1g05668 | CX1g006285 | LOC_Os01g03690 | Os01g0127700 | - | Detail |
| C2H1g13836 | 1:1,297,101-1,302,164 | + | C1H1g08835 | CX1g004218 | LOC_Os01g03710 | Os01g0127900 | - | Detail |
| C2H1g25959 | 1:1,312,131-1,313,344 | - | C1H1g25654 | CX1g002896 | LOC_Os01g03720 | Os01g0128000 | MYB1, Os2R_MYB1 | Detail |
| C2H1g01385 | 1:1,324,388-1,326,037 | - | C1H1g31764 | CX1g004405 | LOC_Os01g03740 | Os01g0128100 | - | Detail |
| C2H1g18960 | 1:1,326,807-1,329,714 | + | C1H1g04042 | CX1g004550 | LOC_Os01g03730 | Os01g0128200 | - | Detail |
| C2H1g15883 | 1:1,329,952-1,330,824 | - | C1H1g30874 | CX1g002239 | LOC_Os01g03750 | Os01g0128300 | MHZ4 | Detail |
| C2H1g19347 | 1:1,331,825-1,337,142 | - | C1H1g07436 | CX1g006333 | LOC_Os01g03760 | Os01g0128400 | - | Detail |
| C2H1g18545 | 1:1,345,364-1,353,485 | + | C1H1g20521 | CX1g003056 | LOC_Os01g03820 | Os01g0128800 | - | Detail |
| C2H1g10390 | 1:1,366,798-1,368,202 | + | C1H1g27481 | CX1g002103 | LOC_Os01g03840 | Os01g0129200 | SL1, sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB | Detail |
| C2H1g17049 | 1:1,379,470-1,382,437 | - | C1H1g30507 | CX1g003490 | LOC_Os01g03870 | Os01g0129500 | - | Detail |
| C2H1g13371 | 1:1,395,250-1,396,259 | + | C1H1g11492 | CX1g006241 | LOC_Os01g03890 | Os01g0129600 | - | Detail |
| C2H1g20654 | 1:1,408,458-1,408,763 | - | - | CX1g003157 | LOC_Os01g03900 | Os01g0129800 | - | Detail |
| C2H1g29639 | 1:1,411,780-1,414,851 | - | C1H1g30416 | CX1g005809 | LOC_Os01g03914 | Os01g0130000 | - | Detail |
| C2H1g19941 | 1:1,416,854-1,417,432 | + | - | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |