| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g18791 | 3:7,288,996-7,295,302 | - | C2H3g22717 | CX3g028831 | LOC_Os03g15020 | Os03g0255100 | - | Detail |
| C1H3g09921 | 3:7,301,234-7,304,501 | - | C2H3g05629 | CX3g025198 | LOC_Os03g15033 | Os03g0255200 | - | Detail |
| C1H3g18545 | 3:7,305,520-7,311,108 | + | C2H3g25452 | CX3g026675 | LOC_Os03g15040 | Os03g0255400 | - | Detail |
| C1H3g28815 | 3:7,312,644-7,318,188 | - | C2H3g13946 | CX3g027919 | LOC_Os03g15050 | Os03g0255500 | - | Detail |
| C1H3g15643 | 3:7,331,169-7,332,085 | - | C2H3g02274 | CX3g026544 | - | Os03g0255900 | - | Detail |
| C1H3g10127 | 3:7,341,430-7,346,475 | - | C2H3g16394 | CX3g029004 | LOC_Os03g15120 | Os03g0256400 | - | Detail |
| C1H3g29561 | 3:7,348,624-7,358,490 | - | C2H3g29398 | CX3g027278 | LOC_Os03g11140 | Os03g0256800 | - | Detail |
| C1H3g02917 | 3:7,361,242-7,364,246 | - | C2H3g13682 | CX3g030888 | LOC_Os03g15190 | Os03g0257000 | - | Detail |
| C1H3g17145 | 3:7,370,694-7,371,562 | - | C2H3g28753 | CX3g026307 | LOC_Os03g15210 | Os03g0257500 | - | Detail |
| C1H3g20346 | 3:7,378,376-7,379,241 | - | C2H3g29554 | CX3g026307 | LOC_Os03g15220 | Os03g0257500 | - | Detail |
| C1H3g29683 | 3:7,380,993-7,384,082 | - | C2H3g21076 | CX3g026307 | - | Os09g0310800 | - | Detail |
| C1H3g04833 | 3:7,384,525-7,387,172 | - | C2H3g13156 | CX3g026307 | LOC_Os03g15230 | Os03g0257600 | - | Detail |
| C1H3g17923 | 3:7,391,359-7,393,233 | + | C2H3g04251 | CX3g028163 | LOC_Os03g15240 | Os03g0257900 | - | Detail |
| C1H3g28844 | 3:7,393,689-7,398,404 | - | C2H3g19447 | CX3g030006 | LOC_Os03g15250 | Os03g0258000 | - | Detail |
| C1H3g11521 | 3:7,405,168-7,406,271 | + | C2H3g22413 | CX3g031275 | LOC_Os03g15270 | Os03g0258200 | - | Detail |
| C1H3g20981 | 3:7,406,319-7,406,549 | - | C2H3g12196 | - | - | - | - | Detail |
| C1H3g24652 | 3:7,413,457-7,418,608 | + | C2H3g23907 | CX3g026336 | LOC_Os03g15290 | Os03g0258500 | ATG6C, OsATG6c, OsATG6b | Detail |
| C1H3g15329 | 3:7,424,554-7,426,245 | + | C2H3g03473 | CX3g028133 | LOC_Os03g15320 | Os03g0258900 | - | Detail |
| C1H3g13462 | 3:7,430,146-7,431,298 | - | C2H3g10429 | CX3g028092 | - | - | - | Detail |
| C1H3g03982 | 3:7,439,478-7,439,949 | + | C2H3g20701 | CX3g029872 | LOC_Os03g15340 | Os03g0259100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g034365 | 4:22,303,520-22,308,857 | + | C1H4g19364 | C2H4g03267 | LOC_Os04g43700 | Os04g0517400 | - | Detail |
| CX4g036341 | 4:22,311,424-22,312,424 | + | C1H4g27983 | C2H4g18098 | LOC_Os04g43710 | Os04g0517500 | - | Detail |
| CX4g031725 | 4:22,316,539-22,318,968 | - | C1H4g02633 | C2H4g25250 | LOC_Os04g43730 | Os04g0517700 | - | Detail |
| CX4g034141 | 4:22,329,406-22,335,779 | - | C1H4g03662 | C2H4g17137 | LOC_Os04g44640 | Os02g0517900 | - | Detail |
| CX4g036203 | 4:22,340,595-22,341,107 | + | - | - | LOC_Os04g43740 | Os04g0517900 | - | Detail |
| CX4g032795 | 4:22,343,187-22,346,785 | - | C1H4g21239 | C2H4g18845 | LOC_Os04g43750 | Os04g0518000 | - | Detail |
| CX4g031424 | 4:22,351,676-22,354,229 | - | C1H4g17678 | C2H4g17450 | LOC_Os04g43760 | Os04g0518100 | - | Detail |
| CX4g031711 | 4:22,360,565-22,362,915 | - | C1H4g22637 | C2H4g28869 | LOC_Os04g43800 | Os04g0518400 | OsPAL6 | Detail |
| CX4g035029 | 4:22,371,274-22,371,441 | - | - | - | LOC_Os04g43820 | Os04g0518600 | - | Detail |
| CX4g035278 | 4:22,383,184-22,386,950 | + | C1H4g21094 | C2H4g12982 | LOC_Os04g43840 | Os04g0518800 | LABA1, LOGL6, OsLOGL6, An-2 | Detail |
| CX4g031681 | 4:22,402,187-22,404,488 | + | C1H4g30028 | C2H4g03913 | LOC_Os04g43910 | Os04g0519700 | ARF10, qSE4 | Detail |
| CX4g033896 | 4:22,412,231-22,423,544 | - | C1H4g09015 | C2H4g13261 | LOC_Os04g43916 | Os04g0519900 | - | Detail |
| CX4g033084 | 4:22,424,705-22,428,846 | - | C1H4g07978 | C2H4g00328 | LOC_Os04g43922 | Os04g0520000 | - | Detail |
| CX4g032290 | 4:22,432,280-22,432,765 | + | - | - | - | - | - | Detail |
| CX4g032805 | 4:22,435,274-22,435,753 | - | - | C2H4g21426 | LOC_Os04g43990 | Os04g0520700 | OsS40-13 | Detail |
| CX4g034414 | 4:22,441,418-22,442,812 | + | C1H4g05728 | C2H4g11598 | LOC_Os04g44030 | Os04g0520900 | - | Detail |
| CX4g032514 | 4:22,449,441-22,451,500 | + | C1H4g29455 | C2H4g13133 | LOC_Os04g44060 | Os04g0521100 | OsPIP2;3 | Detail |
| CX4g034857 | 4:22,455,857-22,456,225 | + | C1H4g05956 | C2H4g17426 | LOC_Os04g44070 | Os04g0521300 | - | Detail |
| CX4g032134 | 4:22,458,913-22,462,661 | + | C1H4g04229 | C2H4g09903 | LOC_Os04g44090 | Os04g0521600 | - | Detail |
| CX4g031385 | 4:22,464,830-22,465,057 | - | - | - | - | - | - | Detail |