| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g11162 | 3:28,942,521-28,952,434 | - | C2H3g22149 | CX3g031238 | LOC_Os03g53880 | Os03g0749800 | - | Detail |
| C1H3g23610 | 3:28,952,669-28,954,097 | + | C2H3g15338 | CX3g030383 | LOC_Os03g53890 | Os03g0749900 | - | Detail |
| C1H3g03771 | 3:28,954,733-28,955,042 | - | C2H3g01456 | CX3g029891 | LOC_Os03g53900 | Os03g0305400 | OsUSP3 | Detail |
| C1H3g04362 | 3:28,955,086-28,955,559 | - | C2H3g01456 | CX3g029891 | LOC_Os03g53900 | Os03g0750000 | - | Detail |
| C1H3g05432 | 3:28,956,506-28,959,788 | - | C2H3g29736 | - | LOC_Os03g53910 | Os03g0750100 | - | Detail |
| C1H3g04679 | 3:28,967,017-28,975,335 | + | C2H3g18037 | CX3g029217 | LOC_Os03g53920 | Os03g0750300 | - | Detail |
| C1H3g27629 | 3:28,981,332-28,983,833 | - | C2H3g28860 | CX3g026013 | LOC_Os03g53950 | Os03g0750700 | - | Detail |
| C1H3g16169 | 3:28,988,871-28,994,656 | - | C2H3g13208 | CX3g028825 | LOC_Os03g53960 | Os03g0750800 | - | Detail |
| C1H3g17674 | 3:28,995,345-28,997,798 | - | C2H3g05622 | CX3g025807 | LOC_Os03g53970 | Os03g0750900 | - | Detail |
| C1H3g30640 | 3:29,000,380-29,001,178 | + | C2H3g27227 | CX3g029898 | LOC_Os03g53980 | Os03g0751000 | - | Detail |
| C1H3g24232 | 3:29,002,393-29,003,257 | - | C2H3g03528 | CX3g026633 | LOC_Os03g54910 | Os03g0221500 | - | Detail |
| C1H3g23380 | 3:29,005,065-29,009,686 | + | C2H3g12979 | CX3g029143 | LOC_Os03g53990 | Os03g0751050 | - | Detail |
| C1H3g12600 | 3:29,010,681-29,014,454 | - | C2H3g03358 | CX3g026203 | LOC_Os03g54000 | Os03g0751100 | - | Detail |
| C1H3g23388 | 3:29,021,406-29,026,794 | + | C2H3g04810 | CX3g028609 | LOC_Os03g54040 | Os03g0751400 | - | Detail |
| C1H3g07489 | 3:29,032,194-29,033,905 | + | C2H3g04305 | CX3g027092 | LOC_Os03g54050 | Os03g0751600 | - | Detail |
| C1H3g19762 | 3:29,042,680-29,048,070 | + | C2H3g09716 | CX3g030127 | LOC_Os03g54084 | Os03g0752100 | PHYC | Detail |
| C1H3g25474 | 3:29,048,583-29,052,457 | + | C2H3g05209 | CX3g031059 | LOC_Os03g54091 | Os03g0752200 | OsSPO11-1, OsTOP6A1 | Detail |
| C1H3g21048 | 3:29,053,913-29,054,721 | - | C2H3g18265 | CX3g026511 | LOC_Os03g54100 | Os03g0752300 | TPKA, TPKa, OsTPKa | Detail |
| C1H3g03067 | 3:29,062,539-29,063,964 | + | C2H3g06363 | CX3g025106 | LOC_Os03g54130 | Os03g0752500 | - | Detail |
| C1H3g23694 | 3:29,065,391-29,069,538 | + | C2H3g21077 | CX3g030009 | LOC_Os03g54150 | Os03g0752700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g036052 | 4:21,992,972-21,995,000 | - | C1H4g05629 | C2H4g25209 | LOC_Os04g43040 | Os04g0509200 | - | Detail |
| CX4g034232 | 4:21,997,882-22,006,361 | - | C1H4g11981 | C2H4g20441 | LOC_Os04g43050 | Os04g0509300 | DCL4, OsDCL4, Os DCL4, Dcl4 | Detail |
| CX4g036588 | 4:22,020,526-22,021,304 | + | C1H4g16776 | C2H4g11339 | LOC_Os04g43060 | Os04g0509400 | - | Detail |
| CX4g033016 | 4:22,027,695-22,029,131 | - | - | - | - | Os04g0509500 | - | Detail |
| CX4g031959 | 4:22,036,787-22,036,939 | + | - | - | - | Os07g0616100 | - | Detail |
| CX4g031449 | 4:22,043,728-22,051,547 | + | C1H4g26953 | C2H4g26482 | LOC_Os04g43130 | Os04g0510300 | - | Detail |
| CX4g031438 | 4:22,052,562-22,058,501 | - | C1H4g20471 | C2H4g00596 | LOC_Os04g43140 | Os04g0510400 | - | Detail |
| CX4g033377 | 4:22,059,906-22,060,067 | - | - | - | - | - | - | Detail |
| CX4g035958 | 4:22,061,569-22,066,460 | + | C1H4g03093 | C2H4g19563 | LOC_Os04g43150 | Os04g0510500 | - | Detail |
| CX4g032117 | 4:22,067,399-22,068,521 | - | C1H4g15211 | C2H4g02205 | LOC_Os04g43160 | Os04g0510600 | - | Detail |
| CX4g033894 | 4:22,069,301-22,071,814 | - | C1H4g29813 | C2H4g20983 | LOC_Os04g43164 | Os04g0510700 | - | Detail |
| CX4g036379 | 4:22,072,896-22,074,217 | - | C1H4g14181 | C2H4g07283 | LOC_Os04g43170 | Os04g0510900 | - | Detail |
| CX4g033517 | 4:22,076,408-22,077,850 | - | C1H4g05553 | C2H4g15069 | LOC_Os04g43200 | Os04g0511200 | OsClo5, OsEFA27 | Detail |
| CX4g033340 | 4:22,079,477-22,081,951 | - | C1H4g09400 | C2H4g28433 | LOC_Os04g43210 | Os04g0511400 | - | Detail |
| CX4g035801 | 4:22,085,731-22,089,912 | - | C1H4g08179 | C2H4g23749 | LOC_Os04g43220 | Os04g0511600 | - | Detail |
| CX4g032463 | 4:22,093,049-22,095,036 | - | C1H4g06483 | C2H4g20352 | LOC_Os04g43230 | Os04g0511700 | - | Detail |
| CX4g032044 | 4:22,098,270-22,104,622 | - | C1H4g23962 | C2H4g11071 | LOC_Os04g43270 | Os04g0512200 | - | Detail |
| CX4g033280 | 4:22,108,331-22,110,905 | - | C1H4g05127 | C2H4g01985 | LOC_Os04g43290 | Os04g0512300 | OsGASD | Detail |
| CX4g034378 | 4:22,111,602-22,115,246 | - | C1H4g19931 | C2H4g16701 | LOC_Os04g43300 | Os04g0512400 | - | Detail |
| CX4g035063 | 4:22,117,901-22,118,296 | - | C1H4g27340 | C2H4g10802 | LOC_Os04g43310 | Os04g0512500 | - | Detail |