| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g21570 | 3:25,741,363-25,746,352 | + | C2H3g05160 | CX3g025253 | LOC_Os03g48270 | Os03g0688300 | CDPK9, OsCDPK9, OsCPK9 | Detail |
| C1H3g15303 | 3:25,761,601-25,789,666 | + | C2H3g19979 | CX3g027485 | LOC_Os03g48300 | Os03g0689100 | - | Detail |
| C1H3g28879 | 3:25,797,199-25,804,299 | + | C2H3g24844 | CX3g027452 | LOC_Os03g48310 | Os03g0689300 | - | Detail |
| C1H3g09435 | 3:25,805,860-25,809,612 | - | C2H3g06110 | CX3g026383 | LOC_Os03g48380 | Os03g0689900 | - | Detail |
| C1H3g04287 | 3:25,811,459-25,813,752 | + | C2H3g14932 | CX3g027552 | LOC_Os03g48390 | Os03g0690000 | - | Detail |
| C1H3g28354 | 3:25,858,813-25,861,993 | - | C2H3g03020 | CX3g028707 | LOC_Os03g48450 | Os03g0690600 | - | Detail |
| C1H3g15398 | 3:25,866,851-25,870,668 | + | C2H3g18585 | - | LOC_Os03g48471 | Os03g0690700 | - | Detail |
| C1H3g11606 | 3:25,900,111-25,902,466 | - | C2H3g25812 | CX3g027625 | LOC_Os03g48480 | Os03g0691400 | - | Detail |
| C1H3g28504 | 3:25,909,216-25,914,267 | + | C2H3g09671 | CX3g027541 | LOC_Os03g48490 | Os03g0691500 | - | Detail |
| C1H3g22244 | 3:25,926,649-25,932,695 | + | C2H3g25810 | CX3g025878 | LOC_Os03g48540 | Os03g0691800 | OsHIPL1 | Detail |
| C1H3g29365 | 3:25,935,730-25,939,266 | + | C2H3g04588 | CX3g028675 | LOC_Os03g48560 | Os03g0692000 | - | Detail |
| C1H3g22267 | 3:25,944,426-25,945,791 | - | C2H3g07015 | CX3g029610 | LOC_Os03g48570 | Os03g0692100 | - | Detail |
| C1H3g08700 | 3:25,952,925-25,954,425 | - | C2H3g07879 | CX3g030062 | LOC_Os03g48590 | Os03g0692300 | - | Detail |
| C1H3g28949 | 3:25,954,962-25,960,357 | - | C2H3g17678 | CX3g026552 | LOC_Os03g48600 | Os03g0692400 | - | Detail |
| C1H3g19100 | 3:25,964,549-25,969,575 | - | C2H3g10834 | CX3g027632 | LOC_Os03g48610 | Os03g0803600 | - | Detail |
| C1H3g17419 | 3:25,974,339-25,976,682 | - | C2H3g04260 | CX3g025938 | LOC_Os03g48626 | Os03g0692700 | - | Detail |
| C1H3g28345 | 3:25,978,712-25,979,248 | - | C2H3g14908 | CX3g031343 | LOC_Os03g48626 | Os03g0692700 | - | Detail |
| C1H3g29633 | 3:25,985,430-25,989,795 | - | C2H3g05966 | CX3g027481 | LOC_Os03g48660 | Os03g0693000 | - | Detail |
| C1H3g04357 | 3:26,012,967-26,013,482 | - | C2H3g10021 | CX3g030139 | LOC_Os03g48710 | Os03g0693400 | - | Detail |
| C1H3g07784 | 3:26,017,832-26,020,916 | + | C2H3g05096 | CX3g027310 | LOC_Os03g48740 | Os03g0693600 | OsIAGT1, OsIAAGLU | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g036052 | 4:21,992,972-21,995,000 | - | C1H4g05629 | C2H4g25209 | LOC_Os04g43040 | Os04g0509200 | - | Detail |
| CX4g034232 | 4:21,997,882-22,006,361 | - | C1H4g11981 | C2H4g20441 | LOC_Os04g43050 | Os04g0509300 | DCL4, OsDCL4, Os DCL4, Dcl4 | Detail |
| CX4g036588 | 4:22,020,526-22,021,304 | + | C1H4g16776 | C2H4g11339 | LOC_Os04g43060 | Os04g0509400 | - | Detail |
| CX4g033016 | 4:22,027,695-22,029,131 | - | - | - | - | Os04g0509500 | - | Detail |
| CX4g031959 | 4:22,036,787-22,036,939 | + | - | - | - | Os07g0616100 | - | Detail |
| CX4g031449 | 4:22,043,728-22,051,547 | + | C1H4g26953 | C2H4g26482 | LOC_Os04g43130 | Os04g0510300 | - | Detail |
| CX4g031438 | 4:22,052,562-22,058,501 | - | C1H4g20471 | C2H4g00596 | LOC_Os04g43140 | Os04g0510400 | - | Detail |
| CX4g033377 | 4:22,059,906-22,060,067 | - | - | - | - | - | - | Detail |
| CX4g035958 | 4:22,061,569-22,066,460 | + | C1H4g03093 | C2H4g19563 | LOC_Os04g43150 | Os04g0510500 | - | Detail |
| CX4g032117 | 4:22,067,399-22,068,521 | - | C1H4g15211 | C2H4g02205 | LOC_Os04g43160 | Os04g0510600 | - | Detail |
| CX4g033894 | 4:22,069,301-22,071,814 | - | C1H4g29813 | C2H4g20983 | LOC_Os04g43164 | Os04g0510700 | - | Detail |
| CX4g036379 | 4:22,072,896-22,074,217 | - | C1H4g14181 | C2H4g07283 | LOC_Os04g43170 | Os04g0510900 | - | Detail |
| CX4g033517 | 4:22,076,408-22,077,850 | - | C1H4g05553 | C2H4g15069 | LOC_Os04g43200 | Os04g0511200 | OsClo5, OsEFA27 | Detail |
| CX4g033340 | 4:22,079,477-22,081,951 | - | C1H4g09400 | C2H4g28433 | LOC_Os04g43210 | Os04g0511400 | - | Detail |
| CX4g035801 | 4:22,085,731-22,089,912 | - | C1H4g08179 | C2H4g23749 | LOC_Os04g43220 | Os04g0511600 | - | Detail |
| CX4g032463 | 4:22,093,049-22,095,036 | - | C1H4g06483 | C2H4g20352 | LOC_Os04g43230 | Os04g0511700 | - | Detail |
| CX4g032044 | 4:22,098,270-22,104,622 | - | C1H4g23962 | C2H4g11071 | LOC_Os04g43270 | Os04g0512200 | - | Detail |
| CX4g033280 | 4:22,108,331-22,110,905 | - | C1H4g05127 | C2H4g01985 | LOC_Os04g43290 | Os04g0512300 | OsGASD | Detail |
| CX4g034378 | 4:22,111,602-22,115,246 | - | C1H4g19931 | C2H4g16701 | LOC_Os04g43300 | Os04g0512400 | - | Detail |
| CX4g035063 | 4:22,117,901-22,118,296 | - | C1H4g27340 | C2H4g10802 | LOC_Os04g43310 | Os04g0512500 | - | Detail |