| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g26497 | 4:3,214,424-3,216,214 | - | C2H4g08785 | CX4g033688 | LOC_Os04g08290 | Os04g0165200 | ART2 | Detail |
| C1H4g15929 | 4:3,222,135-3,223,120 | + | - | CX4g033043 | LOC_Os04g08310 | Os04g0165300 | - | Detail |
| C1H4g20789 | 4:3,226,239-3,228,095 | - | C2H4g02342 | CX4g035325 | LOC_Os04g08320 | Os04g0165400 | - | Detail |
| C1H4g12785 | 4:3,230,389-3,230,700 | - | C2H4g19422 | CX4g035853 | LOC_Os04g08330 | Os04g0165500 | - | Detail |
| C1H4g31381 | 4:3,245,804-3,247,931 | + | C2H4g06874 | CX4g036241 | LOC_Os04g08340 | Os04g0165600 | - | Detail |
| C1H4g30280 | 4:3,250,393-3,254,434 | - | C2H4g04495 | CX4g034083 | LOC_Os04g08350 | Os04g0165700 | - | Detail |
| C1H4g18120 | 4:3,262,917-3,265,964 | - | C2H4g24204 | CX4g034989 | LOC_Os04g08390 | Os04g0166000 | - | Detail |
| C1H4g16596 | 4:3,291,349-3,296,428 | - | C2H4g25306 | CX4g036344 | LOC_Os04g08410 | Os04g0166400 | - | Detail |
| C1H4g13488 | 4:3,322,176-3,326,018 | + | C2H4g16904 | CX4g036063 | LOC_Os04g08450 | Os04g0166600 | OsSFL1 | Detail |
| C1H4g11999 | 4:3,334,056-3,336,300 | + | C2H4g26054 | CX4g033810 | LOC_Os04g08460 | - | - | Detail |
| C1H4g21471 | 4:3,370,486-3,373,209 | - | C2H4g21134 | CX4g033225 | LOC_Os04g08550 | Os04g0167800 | - | Detail |
| C1H4g06121 | 4:3,377,126-3,378,118 | - | C2H4g04423 | CX4g034291 | - | Os04g0167875 | - | Detail |
| C1H4g27562 | 4:3,381,940-3,384,383 | - | C2H4g12568 | CX4g034291 | - | Os04g0167900 | - | Detail |
| C1H4g05004 | 4:3,385,590-3,386,226 | - | C2H4g02316 | CX4g032052 | LOC_Os04g08570 | Os04g0168000 | - | Detail |
| C1H4g17104 | 4:3,407,004-3,407,471 | - | - | CX4g034069 | LOC_Os04g08600 | Os04g0168100 | SRO | Detail |
| C1H4g08725 | 4:3,467,959-3,468,944 | - | - | CX4g036254 | LOC_Os04g08730 | - | - | Detail |
| C1H4g12046 | 4:3,475,828-3,479,747 | + | C2H4g13508 | CX4g033888 | LOC_Os04g08740 | Os04g0169100 | ETR2, OsETR2, OS-ETR2, etr2, OsPK1, PK1, ERL1, OsERL1, OsERS3 | Detail |
| C1H4g26213 | 4:3,498,442-3,500,124 | - | C2H4g19627 | CX4g036277 | LOC_Os04g08764 | Os04g0169500 | - | Detail |
| C1H4g05807 | 4:3,567,302-3,569,530 | + | C2H4g04047 | CX4g034654 | LOC_Os04g08824 | Os04g0171600 | - | Detail |
| C1H4g06403 | 4:3,573,267-3,577,599 | + | C2H4g27784 | CX4g031382 | LOC_Os04g08828 | Os04g0171800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX4g035949 | 4:21,376,464-21,382,072 | - | C1H4g24120 | C2H4g02441 | LOC_Os04g41950 | Os04g0496800 | - | Detail |
| CX4g035104 | 4:21,383,721-21,383,873 | + | - | - | - | - | - | Detail |
| CX4g032219 | 4:21,385,037-21,386,393 | - | C1H4g16028 | C2H4g29152 | LOC_Os04g41960 | Os04g0497000 | - | Detail |
| CX4g033375 | 4:21,389,581-21,392,927 | - | C1H4g00212 | C2H4g15097 | LOC_Os04g41970 | Os04g0497200 | OsGLU3 | Detail |
| CX4g036664 | 4:21,400,192-21,400,577 | + | C1H4g06619 | C2H4g03902 | LOC_Os04g41980 | Os04g0497300 | - | Detail |
| CX4g034539 | 4:21,401,084-21,402,239 | - | C1H4g16966 | C2H4g24147 | LOC_Os04g41990 | Os04g0497350 | OsATG10a | Detail |
| CX4g034309 | 4:21,407,593-21,410,678 | - | C1H4g21848 | C2H4g16343 | LOC_Os04g42000 | Os04g0497400 | - | Detail |
| CX4g031377 | 4:21,411,745-21,415,393 | - | C1H4g01341 | C2H4g27408 | LOC_Os04g42010 | Os04g0497600 | OsLa1 | Detail |
| CX4g031426 | 4:21,418,713-21,419,820 | + | C1H4g30019 | C2H4g04925 | LOC_Os04g42020 | Os04g0497700 | - | Detail |
| CX4g034966 | 4:21,420,900-21,422,789 | + | C1H4g01078 | C2H4g17364 | LOC_Os04g42030 | Os04g0497900 | SWL1 | Detail |
| CX4g035157 | 4:21,424,901-21,426,835 | + | C1H4g01769 | C2H4g10025 | LOC_Os04g42040 | Os04g0498000 | - | Detail |
| CX4g033954 | 4:21,437,182-21,437,488 | - | C1H4g22399 | C2H4g24359 | - | Os04g0498200 | - | Detail |
| CX4g035149 | 4:21,439,080-21,441,062 | - | C1H4g26119 | C2H4g24180 | LOC_Os04g49870 | Os04g0588350 | - | Detail |
| CX4g034831 | 4:21,444,500-21,446,114 | + | C1H4g24329 | C2H4g04320 | LOC_Os04g42090 | Os04g0498600 | - | Detail |
| CX4g035609 | 4:21,449,171-21,451,794 | - | C1H4g07127 | C2H4g02540 | LOC_Os04g42100 | Os04g0498700 | - | Detail |
| CX4g036667 | 4:21,456,210-21,459,880 | + | C1H4g28042 | C2H4g27959 | LOC_Os04g42110 | Os04g0498800 | - | Detail |
| CX4g033443 | 4:21,460,624-21,462,676 | - | C1H4g30393 | C2H4g04345 | LOC_Os04g42120 | Os04g0498900 | - | Detail |
| CX4g033902 | 4:21,464,458-21,464,607 | - | - | - | - | - | - | Detail |
| CX4g035569 | 4:21,466,050-21,468,367 | - | - | C2H4g17942 | - | Os04g0152400 | - | Detail |
| CX4g035181 | 4:21,471,917-21,472,177 | - | - | - | - | Os09g0424850 | - | Detail |